View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21191_low_6 (Length: 478)
Name: NF21191_low_6
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 48842970 - 48842777
Alignment:
| Q |
19 |
aattaactgtcatttaagtgagtatattgttaaaattatatgcttgtgacaggtaccttgttagtatccatgatttatgaaacaatcatattgggatcta |
118 |
Q |
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| T |
48842970 |
aattaactgtcatttaagt----atattgttaaaattatatgcttgtgacaggtaccttgttagtatccatgatctatgaaacaatcatattgggatcta |
48842875 |
T |
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| Q |
119 |
ccaactaagaacataaacaattacagatgaatcttttaaacatgatgca------tatataaacaggatattttttcacaattcacaagccaatatcc |
210 |
Q |
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| T |
48842874 |
ccaactcagaacataaacaattacagatgaatcttttaaacatgatgcatactcctatataaacaggatattttttcacaattcacaagccaatatcc |
48842777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 240 - 478
Target Start/End: Original strand, 48842452 - 48842690
Alignment:
| Q |
240 |
tctcgcattctacgaatgatgaacaatc-atccaaaaacacaccaaagtttgttgtttagcactcatggtatacatcttgaactgaccattttatctccg |
338 |
Q |
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| T |
48842452 |
tctcgcattttccgagggatgaacaatccatccaaaaacacaccaaagtttgttgtttagcaatcatggtatacatcttgaactgtccattttatctcca |
48842551 |
T |
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| Q |
339 |
gtagcagttaacgatcgttcgttggggaatggcaattaactatcttttcagacctacgtatacatgatcacnnnnnnnnnnnnnnnnntcttagtttggt |
438 |
Q |
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| T |
48842552 |
gtagcggttaacgatcgttcgttggggaacggcaattaactatcttttcagacctacgtatacatgatcac-aaaaggaaaagaaaaatcttagtttggt |
48842650 |
T |
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| Q |
439 |
ggtgtggctatctaaaattatatatgtccttgtaggaagc |
478 |
Q |
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| T |
48842651 |
ggtgtggctatctaaaattatatatgtccttgtaggaagc |
48842690 |
T |
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