View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21191_low_7 (Length: 407)
Name: NF21191_low_7
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 11172900 - 11173303
Alignment:
| Q |
10 |
aacaatatcacacacaaaattagcaaatgataaattgatttatagcaacaatgaccataatatataataatcccaggtgaaata---------------- |
93 |
Q |
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|||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11172900 |
aacaatatcacacacaaaattaccaaatgataaattgatatttagcaacaatgaccataatatataataatcccaggtgaaataattcaagtacatatat |
11172999 |
T |
|
| Q |
94 |
-tataatatggaaaacaacattataccctccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattaacttatgagtccatattcacc |
192 |
Q |
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|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||| |
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| T |
11173000 |
atataatatggaaaaca---ttataccccccaataaacaaatttaactgaaaaatccgactcaaccgaataacttattagcatatgaatccatattcacc |
11173096 |
T |
|
| Q |
193 |
aatgatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggctttcactgaaggtattgt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11173097 |
aatgatgagaaacaaagttttctatatgacacatacaattcaaatatgaagattccaattaacttcagcatagcacaaaggc-ttcactgaaggtattgt |
11173195 |
T |
|
| Q |
293 |
tctcgaagtctatctctgttctcatcccaccatttccttgcctctgcatctccaaacctctgtcggctgcaaatacagttcaaaaaatcatcagcacaga |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11173196 |
tctcgaagtctatctctgttctcatcccaccatttccttgcctctgcatctccaaacctctgtcggctgcaaatacagttcaaaaaatcatcagtacaga |
11173295 |
T |
|
| Q |
393 |
ccctacca |
400 |
Q |
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|||||||| |
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| T |
11173296 |
ccctacca |
11173303 |
T |
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