View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21191_low_8 (Length: 374)
Name: NF21191_low_8
Description: NF21191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21191_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 13 - 357
Target Start/End: Original strand, 46158536 - 46158880
Alignment:
| Q |
13 |
aatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctttgtaatactacttccgtccctaactataagactactt |
112 |
Q |
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| T |
46158536 |
aatattattgagctgcaggtaaaatgttgtttagtttgaattacagaaaattcttatgatcttcgtaatactacttccgtccctaactataagactactt |
46158635 |
T |
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| Q |
113 |
ttaaattttaactgcattaattaacatacattgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtaga |
212 |
Q |
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| T |
46158636 |
ttaaattttaactatattaattaacatacattgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtaga |
46158735 |
T |
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| Q |
213 |
gctggacacaatgtgtggaacctctaaagaaggcacacaattttccaatgcttttgatgaagctagtgctactattatgtttcggtatgttaactttcgc |
312 |
Q |
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| T |
46158736 |
gctggacacaatgtgtggaacctctaaagaaggcacacaattttccaatgcttttaatgaagctagtgctactattatgttttggtatgttaactttctc |
46158835 |
T |
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| Q |
313 |
tggaaggttcagaggttcctgaacattggatcggaagcagtactt |
357 |
Q |
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| T |
46158836 |
tggaaggttcagaggttcctgaacattggatcggaagcggtactt |
46158880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 143 - 357
Target Start/End: Original strand, 46165743 - 46165957
Alignment:
| Q |
143 |
ttgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtagagctggacacaatgtgtggaacctctaaaga |
242 |
Q |
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| T |
46165743 |
ttgcttattggcaggacctattcatgaaatcaactctagattctgtattcaaagttatccttggtgtagaattggacacaatgtgtggaacctatagaga |
46165842 |
T |
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| Q |
243 |
aggcacacaattttccaatgcttttgatgaagctagtgctactattatgtttcggtatgttaactttcgctggaaggttcagaggttcctgaacattgga |
342 |
Q |
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| T |
46165843 |
aggcacacaattttccaatgcttttgatgaagctagtgctgctattatgtttcggtatgttaactttctctggaaggttcagcggttcctgaacatggga |
46165942 |
T |
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| Q |
343 |
tcggaagcagtactt |
357 |
Q |
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| T |
46165943 |
tcggaagcagtactt |
46165957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 46165548 - 46165638
Alignment:
| Q |
13 |
aatattattgagctgaaggtaaaatgttgtttagtttgaattacagaaaattcttatgatctttgtaatactacttccgtccctaactata |
103 |
Q |
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||||||||||||||| ||||||||| ||| || ||||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
46165548 |
aatattattgagctgcaggtaaaattttgcttggtttgaaatacaaaaaattcttatgatcttcgtaatactacctccgtccctaactata |
46165638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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