View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21192_high_4 (Length: 312)
Name: NF21192_high_4
Description: NF21192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21192_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 4664667 - 4664955
Alignment:
| Q |
15 |
attaaatcactaaatagttattctaacttgaattaacaaaactaacatacactcaattaattattggctaggaattgattgctgaaggagcagtggagct |
114 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4664667 |
attaaatcactaaacagatattctaacttgaattaacaaaactaatatacactcaattaattattggctaggaattgattgctgaaggagcagtggagct |
4664766 |
T |
|
| Q |
115 |
tttggtgccgggaaatttgcctgttggatgcagtgctgtgtacctaactttgtttagtagcaagaacatatcggactatgatgaaaatggatgtttaaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4664767 |
tttggtgccgggaaatttgcctgttggatgcaatgctgtgtacctaactttgtttagtagcaagaacatatcagactatgatgaaaatggatgtttaaaa |
4664866 |
T |
|
| Q |
215 |
gctttcaatggtttagcaaattaccacaacatgcagctcaattttgccttacagacactaaggacgaagaatcctcatgcaagaataat |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4664867 |
gctttcaatggtttagcaaattaccacaacatgcagctcaattttgccttacagacactaaggaccaagaatcctcatgcaagaataat |
4664955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 61 - 303
Target Start/End: Original strand, 4667881 - 4668123
Alignment:
| Q |
61 |
atacactcaattaattattggctaggaattgattgctgaaggagcagtggagcttttggtgccgggaaatttgcctgttggatgcagtgctgtgtaccta |
160 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| |
|
|
| T |
4667881 |
atacactcaattaattattggctaggaattgatcgctgaaggagcagtggagcttttggtgccaggaaatttgcctgttggatgctctgttgtgtaccta |
4667980 |
T |
|
| Q |
161 |
actttgtttagtagcaagaacatatcggactatgatgaaaatggatgtttaaaagctttcaatggtttagcaaattaccacaacatgcagctcaattttg |
260 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||| |
|
|
| T |
4667981 |
acttcgtttagcagcaagaacataaaggactatgatgaaaatggatgtttaaaatctttcaatgatttagcaaagaaccacaacatgcagctcaatattg |
4668080 |
T |
|
| Q |
261 |
ccttacagacactaaggacgaagaatcctcatgcaagaataat |
303 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4668081 |
ccttacagacactaaggaagaagaatcctcatgcaagaataat |
4668123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University