View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21192_low_2 (Length: 363)
Name: NF21192_low_2
Description: NF21192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21192_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 24993350 - 24993009
Alignment:
| Q |
1 |
acagagagagccaaaaacctgtgaccgaattttcatcgatatcatcttgttcatatttgagccgctccaacacattatttaacaataataaatcagttta |
100 |
Q |
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| T |
24993350 |
acagagagagccaaaaaccagtgaccgaattttcatcgatatcatctcgttcatattttagccgctccaacacattatttaacaatattaaatcagttta |
24993251 |
T |
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| Q |
101 |
ctgcacatgctagcattttgcagatgccatacttgttgtaaatttgcagctttagttttgtattcaaaagctatatagataaatatacacacacattcat |
200 |
Q |
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| T |
24993250 |
ctgcacatgctagcattttgcagatgccatacttgttgtaaatttgcagctttagttttgtattcaaaagctatatatctaaatata----cacattcat |
24993155 |
T |
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| Q |
201 |
ctacacacaaacctttaagagtgctgatttacaccgttgattctatcaccagccacaccctacaatagatatcacaagccaaaaattaataagaaataag |
300 |
Q |
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| T |
24993154 |
ctacacacaaacctttacgagtgctgatttacaccgttgatactatcaccagccacaccctacaatagatatcacaagcaaaaaattaataagaaataag |
24993055 |
T |
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| Q |
301 |
gtttgaataataatctgaacactaatgacatgataattttaaaagt |
346 |
Q |
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| T |
24993054 |
gtttgcataataatctgaacactaatggcatgataattttaaaagt |
24993009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 1618173 - 1618104
Alignment:
| Q |
191 |
acacattcatctacacacaaacctttaagagtgctgatttacaccgttgatt-ctatcaccagccacacc |
259 |
Q |
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| T |
1618173 |
acacattcatctaagcacaaacctttaagagtgctggtttacacccttaattattatcacaagccacacc |
1618104 |
T |
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