View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21192_low_3 (Length: 349)
Name: NF21192_low_3
Description: NF21192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21192_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 31716487 - 31716815
Alignment:
| Q |
5 |
tagaggcaaatgcttgaataattgtttatgcatggcatatacaaatacaaatataaatggcgcaggaagtggttgtgttatgtggtttggtgatttaatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31716487 |
tagaggcaaatgcttgaataattgttcatgcatggcatatacaaatacaaatataagtggcgcaggaagtggttgtgttatgtggtttggtgatttaatc |
31716586 |
T |
|
| Q |
105 |
gatatcaaacttattccaggtggtgggcaatttctatatatcaggatgcctgcttcagaattaggtgaatacttcattaatttcaccaaatttttccttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31716587 |
gatatcaaacttattccaggtggtgggcaatttctatatatcaggatgcctgcttcagaattaggtgaatacttcattaatttcaccaaatttttccttt |
31716686 |
T |
|
| Q |
205 |
taatattctttgagaatttaaatcttgtaattgaaaatggaatttaactaagttgctttgtttagataaaggcaacaatagtattgaggatgaccacagg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31716687 |
taatattctttgagaatttaaatcttgtaattgaaaatggaatttaactaagttgctttgtttagataaaggcaacaatagtattgaggatgagcacagg |
31716786 |
T |
|
| Q |
305 |
aggaacacaagaaaaatagctgtaattac |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31716787 |
aggaacacaagaaaaatagctgtaattac |
31716815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 31722361 - 31722689
Alignment:
| Q |
5 |
tagaggcaaatgcttgaataattgtttatgcatggcatatacaaatacaaatataaatggcgcaggaagtggttgtgttatgtggtttggtgatttaatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31722361 |
tagaggcaaatgcttgaataattgttcatgcatggcatatacaaatacaaatataagtggcgcaggaagtggttgtgttatgtggtttggtgatttaatc |
31722460 |
T |
|
| Q |
105 |
gatatcaaacttattccaggtggtgggcaatttctatatatcaggatgcctgcttcagaattaggtgaatacttcattaatttcaccaaatttttccttt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31722461 |
gatatcaaacttattccaggtggtgggcaatttctatatatcaggatgcctgcttcagaattaggtgaatacttcattaatttcaccaaatttttccttt |
31722560 |
T |
|
| Q |
205 |
taatattctttgagaatttaaatcttgtaattgaaaatggaatttaactaagttgctttgtttagataaaggcaacaatagtattgaggatgaccacagg |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31722561 |
taatattctttgagaatttaaatcttgtaattgaaaatggaatttaactaagttgctttgtttagataaaggcaacaatagtattgaggatgagcacagg |
31722660 |
T |
|
| Q |
305 |
aggaacacaagaaaaatagctgtaattac |
333 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
31722661 |
aggaacacaagaaaaatagctgtaattac |
31722689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 5 - 330
Target Start/End: Original strand, 31701179 - 31701506
Alignment:
| Q |
5 |
tagaggcaaatgcttgaataattgtttatgcatggcatatacaaatacaaatataaatggcgcaggaagtggttgtgttatgtggtttggtgatttaatt |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31701179 |
tagaggcaaatgcttgaataattgttcatgcatggcctatacaaatacaaatataagtggagcaggaagtggttgtgttatgtggtttggtgatttaatt |
31701278 |
T |
|
| Q |
105 |
gatatcaaacttattccaggtggtgggcaatttctatatatcaggatgcctgcttcagaattaggtgaatacttcattaatttcaccaaatttttccttt |
204 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| || ||| |
|
|
| T |
31701279 |
gatatcaaacttattccagttggtgggcaaggtctatatatcaggatgcctgcttcggaattaggtgaaaacttcactaatttcaccaatatt----ttt |
31701374 |
T |
|
| Q |
205 |
taatattctttgagaatttaaatct-----tgtaattgaaaatggaatttaacta-agttgctttgtttagataaaggcaacaatagtattgaggatgac |
298 |
Q |
| |
|
| ||||||||||| ||||||| || |||| |||||| || |||||||||| |||| |||||||||| |||| |||||||| || |||||| || |
|
|
| T |
31701375 |
ttatattctttgaaaatttaagccttgtactgtatttgaaagtgtaatttaactatagttaatttgtttagacaaagccaacaataatactgaggacgag |
31701474 |
T |
|
| Q |
299 |
cacaggaggaacacaagaaaaatagctgtaat |
330 |
Q |
| |
|
||||||| |||| | |||||||||| |||||| |
|
|
| T |
31701475 |
cacaggacgaactcgagaaaaatagttgtaat |
31701506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 31723739 - 31723952
Alignment:
| Q |
12 |
aaatgcttgaataattgtttatgcatggcatatacaaatacaaatataaatggcgcaggaagtggttgtgttatgtggtttggtgatttaattgatatca |
111 |
Q |
| |
|
|||||||||||||| |||| |||||||| ||||||||||||||||||| ||| ||| | |||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
31723739 |
aaatgcttgaataactgttcctgcatggcttatacaaatacaaatataagtggagcacggagtggttgtgttatgtggttcggtgatttaactgatatca |
31723838 |
T |
|
| Q |
112 |
aacttattccaggtggtgggcaatttctatatatcaggatgcctgcttcagaattaggtgaatacttcattaatttcaccaaatttttccttttaatatt |
211 |
Q |
| |
|
||| |||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
31723839 |
aacatattccagatggtgggcaagttctatatataaggatgcctgtttcagaattaggtgaatacttcattaatttcaataattttttccttttattatt |
31723938 |
T |
|
| Q |
212 |
ctttgagaatttaa |
225 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
31723939 |
ctttgacaatttaa |
31723952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 31731730 - 31731824
Alignment:
| Q |
12 |
aaatgcttgaataattgtttatgcatggcatatacaaatacaaatataaatggcgcaggaagtggttgtgttatgtggtttggtgatttaattga |
106 |
Q |
| |
|
||||| ||||| ||||||| || ||||| ||||||||| |||| |||| ||| | ||| || |||||||||||||||||||||||| ||||||| |
|
|
| T |
31731730 |
aaatgtttgaacaattgttcttgtatggcttatacaaattcaaacataagtggagaagggagcggttgtgttatgtggtttggtgatctaattga |
31731824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 23562104 - 23562007
Alignment:
| Q |
12 |
aaatgcttgaataattgtttatgcatggcatatacaaatacaaatataaatggcgcaggaagtggttgtgttatgtggtttggtgatttaattgatat |
109 |
Q |
| |
|
||||||||||||||||||| || | ||| ||||| ||| | || |||| || | ||| ||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
23562104 |
aaatgcttgaataattgttcttgtacggcttatactaattctaacataaccggagaaggcagtggctgtgtcatgtggtttggtgatttaattgatat |
23562007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University