View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_1 (Length: 933)
Name: NF21193_high_1
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 784; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 784; E-Value: 0
Query Start/End: Original strand, 11 - 916
Target Start/End: Original strand, 48893582 - 48894473
Alignment:
| Q |
11 |
cacagacatttttaaaaaggcccacatcatcatctcaattctcaactactacacagtacactactgataaagataaagattcacaaacaaacaaacacat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48893582 |
cacagacatttttaaaaaggcccacatcatcatctcaa-------ctactacacagtacactactgataaagat------tcacaaacaaacaaacacat |
48893668 |
T |
|
| Q |
111 |
ccaacatcctaacacaaacctgtcccaccaaattacagtcaaactactatactaacttagaaaatgggacttaggtcaaactcaatccattttgcatcnn |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48893669 |
ccaacatcctaacacaaacctgtcccaccaaattacagtcaaactactatactaacttagaaaatgggacttaggtcaaacacaatccattttgcatctt |
48893768 |
T |
|
| Q |
211 |
nnnnnccttcactttttaactctacaatcactcactatcattacattattgaacagctgctggtagtattgtcatcactgaacatgtgcgc---agagtg |
307 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
48893769 |
tttttccttcactttttaactctacaatcact----atcattacattattgaacagctgctggtagtattgtcatcactgaacatgtgtgctgcagagtt |
48893864 |
T |
|
| Q |
308 |
atcctccgttggataacaagcatttgcataggagtaatttgcaggaatgtagttattataattgtaatgatagccagtattaggaggaacaaaaggtgac |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48893865 |
atcctccgttggataacaagcatttgcataggagtaatttgcaggaatgtagttattataattgtaatgatagccagtattaggaggaacaaaaggtgac |
48893964 |
T |
|
| Q |
408 |
ctgtgatacatcatctgaggctgttgctgcatagcatgccttgcctgcatgttcatcaatgaagatggatggttattgaaaccattcatgttcattaaca |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48893965 |
ctgtgatacatcatctgaggctgttgctgcatagcatgccttgcctgcatgttcatcaatgaagatggatggttattgaaaccattcatgttcattaaca |
48894064 |
T |
|
| Q |
508 |
tagatggtggatactggccagtaacaataccaccatttggaatagatgcagtggatcctgcaggaaaacctcctaaaccattggaatttccacctacaac |
607 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894065 |
tagatggtggatactggccagtaacaaaaccaccatttggaatagatgcagtggatcctgcaggaaaacctcctaaaccattggaatttccacctacaac |
48894164 |
T |
|
| Q |
608 |
agtagcactaccagcaccattgttattgttcccattaaaaccagctaaattcatcatagcaccaatgtcgctagcccttttggattctccaaggttgaga |
707 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894165 |
agtagcactaccagcaccattgttattgttcccattaaaaccagctaaattcatcatagcaccaatgtcgctagcccttttggattctccaaggttgaga |
48894264 |
T |
|
| Q |
708 |
ctttcattaccaaccaaatgagcattgttcaacttcatagctgccaatgttttctgatcaatcccattagcaacttccttcattaccatgttctgatttg |
807 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48894265 |
ctttcattaccaaccaaatgagcattgttcaacttcatagctgccaatgttttctgatcaatcccattagcaccttccttcattaccatgttctgatttg |
48894364 |
T |
|
| Q |
808 |
gatttcctttcttgccactatttccattgccggcattgttcatcttagctataatacctttcttcacattgtttgcatcattcgcttgctttagcatctg |
907 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48894365 |
gatttcctttcttgccactatttccattgccagcattgttcatcttagctataatacctttcttcacattgtttgcatcattcgcttgctttagcatctg |
48894464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 337 - 569
Target Start/End: Original strand, 24742764 - 24743001
Alignment:
| Q |
337 |
aggagtaatttgcaggaatgtagttattataattgtaatgata---gccagtattaggaggaacaaaa--ggtgacctgtgatacatcatctgaggctgt |
431 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||| ||| ||||||||||||||||||| |
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| T |
24742764 |
aggagtaatttgcatgaatgtagttattataattgtaataataatagccagtattaggaggaacaaaaaaggtgatgtgtaatacatcatctgaggctgt |
24742863 |
T |
|
| Q |
432 |
tgctgcatagcatgccttgcctgcatgttcatcaatgaagatggatggttattgaaaccattcatgttcattaacatagatggtggatactggccagtaa |
531 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |
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| T |
24742864 |
tgctgcatagcatgccttgccagcatgttcatcaatgaaaatggatggttattgaaaccattcatgttcattagcatagatgatggatattggccagtaa |
24742963 |
T |
|
| Q |
532 |
caataccaccatttggaatagatgcagtggatcctgca |
569 |
Q |
| |
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||| ||||||||||||||||| |||| |||||||||| |
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| T |
24742964 |
caaaaccaccatttggaatagctgcaaaggatcctgca |
24743001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 24742663 - 24742716
Alignment:
| Q |
89 |
attcacaaacaaacaaacacatccaacatcctaacacaaacctgtcccaccaaa |
142 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
24742663 |
attcacaaacaaacaaacacatctaacatcctaacacaaacctgtcccaccaaa |
24742716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 3e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 430 - 542
Target Start/End: Complemental strand, 10654786 - 10654674
Alignment:
| Q |
430 |
gttgctgcatagcatgccttgcctgcatgttcatcaatgaagatggatggttattgaaaccattcatgttcattaacatagatggtggatactggccagt |
529 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
10654786 |
gttgctgcatagcatgccttgccagcatgttcatcaatgaagatggatggttattgaaaccattcatgttcattaacatagatgatggatattggccagt |
10654687 |
T |
|
| Q |
530 |
aacaataccacca |
542 |
Q |
| |
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||||| ||||||| |
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| T |
10654686 |
aacaaaaccacca |
10654674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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