View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21193_high_11 (Length: 577)

Name: NF21193_high_11
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21193_high_11
NF21193_high_11
[»] chr4 (19 HSPs)
chr4 (18-563)||(54165875-54166429)
chr4 (187-572)||(52628072-52628468)
chr4 (227-543)||(21790594-21790916)
chr4 (220-534)||(48861824-48862140)
chr4 (187-484)||(48840972-48841261)
chr4 (281-484)||(8745701-8745904)
chr4 (216-401)||(17816050-17816235)
chr4 (241-347)||(856825-856931)
chr4 (407-572)||(6016736-6016907)
chr4 (329-462)||(43892531-43892664)
chr4 (407-572)||(22786028-22786199)
chr4 (407-572)||(2407155-2407327)
chr4 (230-338)||(16608526-16608633)
chr4 (230-405)||(11950431-11950588)
chr4 (230-404)||(8762708-8762884)
chr4 (495-563)||(11950635-11950704)
chr4 (437-478)||(5476406-5476447)
chr4 (230-311)||(46694266-46694347)
chr4 (440-484)||(8762620-8762664)
[»] chr8 (23 HSPs)
chr8 (230-572)||(38172696-38173037)
chr8 (246-484)||(13541421-13541658)
chr8 (246-484)||(13682815-13683052)
chr8 (200-484)||(43115018-43115300)
chr8 (326-483)||(40118065-40118219)
chr8 (229-427)||(32415741-32415939)
chr8 (230-563)||(41570264-41570603)
chr8 (296-543)||(38699688-38699939)
chr8 (329-462)||(4072236-4072369)
chr8 (216-411)||(6115005-6115200)
chr8 (399-563)||(18881850-18882019)
chr8 (329-462)||(21441602-21441735)
chr8 (407-560)||(12491566-12491726)
chr8 (329-462)||(41323190-41323323)
chr8 (230-338)||(13741472-13741579)
chr8 (131-324)||(40116488-40116676)
chr8 (239-442)||(31911086-31911289)
chr8 (230-338)||(1233704-1233811)
chr8 (230-338)||(13641060-13641167)
chr8 (230-393)||(18881336-18881503)
chr8 (296-372)||(5808775-5808851)
chr8 (415-452)||(33613707-33613744)
chr8 (258-338)||(25338077-25338156)
[»] scaffold0110 (1 HSPs)
scaffold0110 (187-462)||(6920-7195)
[»] chr5 (16 HSPs)
chr5 (187-572)||(16908548-16908936)
chr5 (188-367)||(22098916-22099095)
chr5 (230-484)||(41640055-41640309)
chr5 (231-563)||(19948758-19949089)
chr5 (187-484)||(34033870-34034182)
chr5 (329-462)||(17768985-17769118)
chr5 (329-462)||(13517502-13517635)
chr5 (374-484)||(17695897-17696007)
chr5 (222-340)||(14521475-14521593)
chr5 (310-563)||(40360942-40361197)
chr5 (407-528)||(40528129-40528255)
chr5 (204-337)||(17698666-17698797)
chr5 (356-421)||(22099209-22099273)
chr5 (228-292)||(2065657-2065722)
chr5 (495-563)||(7008999-7009068)
chr5 (230-369)||(42352998-42353139)
[»] chr7 (27 HSPs)
chr7 (360-561)||(34659348-34659553)
chr7 (187-484)||(37202603-37202900)
chr7 (200-543)||(29715769-29716113)
chr7 (188-367)||(34658902-34659081)
chr7 (331-484)||(46211664-46211817)
chr7 (216-411)||(25591966-25592161)
chr7 (329-484)||(48609092-48609247)
chr7 (407-572)||(13465458-13465630)
chr7 (331-484)||(758835-758988)
chr7 (407-572)||(28491315-28491487)
chr7 (329-462)||(39719883-39720016)
chr7 (335-484)||(83618-83768)
chr7 (224-341)||(37048897-37049014)
chr7 (230-338)||(45855415-45855522)
chr7 (230-411)||(14046865-14047046)
chr7 (230-411)||(14356895-14357076)
chr7 (311-564)||(17949051-17949310)
chr7 (296-373)||(27097106-27097183)
chr7 (296-373)||(27181120-27181197)
chr7 (296-372)||(37712930-37713006)
chr7 (495-573)||(25592225-25592304)
chr7 (495-539)||(14047109-14047153)
chr7 (495-539)||(14357139-14357183)
chr7 (407-484)||(25439583-25439658)
chr7 (230-276)||(27097058-27097104)
chr7 (230-276)||(27181199-27181245)
chr7 (307-372)||(37003695-37003760)
[»] scaffold0186 (1 HSPs)
scaffold0186 (231-563)||(22546-22887)
[»] chr1 (26 HSPs)
chr1 (216-484)||(23614462-23614728)
chr1 (246-462)||(1600595-1600810)
chr1 (200-484)||(10406175-10406456)
chr1 (230-563)||(47367704-47368043)
chr1 (200-484)||(10177712-10177994)
chr1 (187-484)||(19313184-19313478)
chr1 (281-543)||(11142565-11142832)
chr1 (407-572)||(30950734-30950906)
chr1 (316-484)||(44961379-44961547)
chr1 (272-410)||(33241370-33241509)
chr1 (329-462)||(15757680-15757813)
chr1 (418-559)||(33240800-33240946)
chr1 (329-462)||(10620067-10620200)
chr1 (230-338)||(29357177-29357284)
chr1 (306-422)||(52111063-52111177)
chr1 (230-338)||(27696645-27696752)
chr1 (407-481)||(29799076-29799150)
chr1 (424-484)||(28403123-28403183)
chr1 (230-387)||(5184789-5184946)
chr1 (238-435)||(33322990-33323189)
chr1 (356-476)||(8262056-8262176)
chr1 (222-366)||(46515441-46515585)
chr1 (399-560)||(46515604-46515767)
chr1 (230-404)||(10989326-10989502)
chr1 (283-324)||(44960960-44961001)
chr1 (491-559)||(52110936-52111005)
[»] chr3 (19 HSPs)
chr3 (216-484)||(16152123-16152389)
chr3 (227-411)||(11906662-11906841)
chr3 (282-443)||(11027911-11028072)
chr3 (329-462)||(46823808-46823941)
chr3 (407-572)||(40763813-40763985)
chr3 (329-484)||(17652974-17653129)
chr3 (329-462)||(21295936-21296069)
chr3 (377-572)||(29648391-29648593)
chr3 (216-411)||(52403345-52403532)
chr3 (407-572)||(20843113-20843284)
chr3 (230-338)||(19795485-19795592)
chr3 (230-360)||(37175345-37175475)
chr3 (407-521)||(3458054-3458173)
chr3 (230-333)||(35061893-35061995)
chr3 (230-323)||(40785344-40785437)
chr3 (296-372)||(29123484-29123560)
chr3 (495-564)||(52403211-52403281)
chr3 (230-324)||(54025806-54025900)
chr3 (351-411)||(38171407-38171466)
[»] chr6 (15 HSPs)
chr6 (281-563)||(29486351-29486636)
chr6 (211-411)||(31216353-31216555)
chr6 (216-484)||(24428630-24428900)
chr6 (216-411)||(22956511-22956705)
chr6 (216-411)||(23831687-23831881)
chr6 (331-484)||(29363532-29363685)
chr6 (329-484)||(34729779-34729934)
chr6 (407-572)||(1780568-1780740)
chr6 (272-385)||(27673933-27674046)
chr6 (230-338)||(33224595-33224702)
chr6 (230-324)||(8560055-8560148)
chr6 (495-564)||(22956377-22956447)
chr6 (495-564)||(23831945-23832015)
chr6 (495-536)||(31216251-31216292)
chr6 (399-529)||(903992-904124)
[»] chr2 (20 HSPs)
chr2 (187-543)||(4435055-4435414)
chr2 (385-563)||(42799090-42799275)
chr2 (407-572)||(16546354-16546526)
chr2 (407-528)||(39070165-39070292)
chr2 (230-423)||(26180506-26180690)
chr2 (407-572)||(45655872-45656043)
chr2 (289-393)||(18159928-18160032)
chr2 (289-393)||(18308087-18308191)
chr2 (281-484)||(21746168-21746371)
chr2 (295-393)||(18161103-18161200)
chr2 (223-344)||(38881161-38881282)
chr2 (376-435)||(38881702-38881761)
chr2 (407-484)||(37614591-37614671)
chr2 (230-404)||(8230255-8230431)
chr2 (230-404)||(35524792-35524968)
chr2 (437-484)||(35524700-35524747)
chr2 (374-408)||(31106830-31106864)
chr2 (220-270)||(45656053-45656103)
chr2 (230-331)||(42799296-42799397)
chr2 (491-543)||(14802674-14802726)
[»] scaffold0002 (1 HSPs)
scaffold0002 (230-484)||(428351-428603)
[»] scaffold0005 (1 HSPs)
scaffold0005 (216-543)||(292192-292522)
[»] scaffold0481 (1 HSPs)
scaffold0481 (200-479)||(6500-6773)
[»] scaffold1554 (1 HSPs)
scaffold1554 (233-409)||(637-812)
[»] scaffold1709 (1 HSPs)
scaffold1709 (187-343)||(1282-1437)
[»] scaffold0361 (1 HSPs)
scaffold0361 (187-288)||(6959-7059)
[»] scaffold0271 (1 HSPs)
scaffold0271 (230-366)||(20199-20336)
[»] scaffold0004 (1 HSPs)
scaffold0004 (254-338)||(211914-211997)


Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Complemental strand, 54166429 - 54165875
Alignment:
Q  18 ttgaacacttaaaatgaggtgttatgttgtggatgctctaattgtttaaaatattaccaagttaatttttgtcaataannnnnnnnnagcaaattaattt 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||    
T  54166429 ttgaacacttaaaattaggtgttatgttgtggatgctctaattgtttaaaatattaccaagttaatttttgtcaataatttttttt-agcaaattaattt 54166331  T
Q  118 atttggtcccttaac--------------aggggtggttccttgcatgttggaggggtagctttggctacccnnnnnnnnnnnttattcttcaatcggtc 203  Q
    |||||||||||||||              ||||| ||||||||||||||||||||   ||||||||||||||           |||||||||||||||||    
T  54166330 atttggtcccttaactatggtcccttaacaggggcggttccttgcatgttggagg---agctttggctacccaaaaaaaaaa-ttattcttcaatcggtc 54166235  T
Q  204 ggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatatt 303  Q
    |||| | || ||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54166234 ggtaagtatttttatccagctatcccaaataataaacattgagctacctcaaacaagttcagttgtctaaaattaggataaataagaaagtaaaaatatt 54166135  T
Q  304 actacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaat 403  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54166134 actacatgattgatagattttattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaat 54166035  T
Q  404 attcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctataatcgctcaattatggata 503  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  54166034 attcataaataaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctataatcgctcaattatggaaa 54165935  T
Q  504 aaattggtttcttgaaatacattttgtccaacttttctaataactattgtcaatttttat 563  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54165934 aaattgatttcttgaaatacattttgtccaacttttctaataactattgtcaatttttat 54165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 187 - 572
Target Start/End: Original strand, 52628072 - 52628468
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    ||||||||||||||||||||||| || | |||||||||| |  |||||||||| ||||||||||| |||||||||| | ||||  ||||||| |||||||    
T  52628072 ttattcttcaatcggtcggtatgtatttatatccggctacctcaaataataaacattgagctaccccaaacaagttcaattgttgaaaattaagataaat 52628171  T
Q  287 aagaaagtaaaaatattactacatgattgatagattta-at-tatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaa 384  Q
    ||||| |||||||||||| ||||||||||||| || || || ||||||||||||||||||||||| | ||||||||||||||| |||||||| |||||||    
T  52628172 aagaaggtaaaaatattattacatgattgatatatatatatatatattggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaa 52628271  T
Q  385 taaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta- 483  Q
    |||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||     
T  52628272 taaaaattatcaagacaatagtcataaataaattaaatgaacaatgagtttattgcaaataacctattagtttacattggaaaatatattattaatctat 52628371  T
Q  484 --------taatcgctcaattatggataaaattggtttcttgaaatacattttgtccaacttttctaataactattgtcaatttttattctctgttg 572  Q
            ||| | |||||||||  |||||| |||||||||||||| ||| |||||||| |||||||||| ||||||||||||||||| || |||||    
T  52628372 atatttagtaaacactcaattatttataaaactggtttcttgaaatgcatcttgtccaaattttctaatagctattgtcaatttttatcctttgttg 52628468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 227 - 543
Target Start/End: Original strand, 21790594 - 21790916
Alignment:
Q  227 cctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaat 326  Q
    ||||||||||||||||||||| |||  ||| || || ||||| | |||||||  |||||||||||| | ||||||||||||||||||||||  ||||| |    
T  21790594 cctaaataataaatattgagccaccataaataaattcagttgccgaaaattaacataaataagaaatttaaaatattactacatgattgattaatttatt 21790693  T
Q  327 tatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggac 426  Q
    |||||||||||||||||| | || |||||| |||||||||| |||||||||| |||  |||||||||| ||||| ||| |||||||||||| ||||||||    
T  21790694 tatattggtttgatacttccggtctcaatagcaattatagagaaaactttttaaacggtaaaaattattaagactatagtcataaacaaataaaatggac 21790793  T
Q  427 aatgag--tttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatggataaaattggtttcttgaa 519  Q
    ||||||  ||| ||||||||||||||||  ||||| ||| |||| ||||||||||||||     ||| |  ||||||||||| |||||||  ||||| ||    
T  21790794 aatgagttttttttgcaaataacctatttatttac-ttggaaaagacattattaatctagttagtaaacaatcaattatggacaaaattgacttcttaaa 21790892  T
Q  520 atacattttgtccaacttttctaa 543  Q
    || ||||||  |||||||||||||    
T  21790893 atgcattttacccaacttttctaa 21790916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 220 - 534
Target Start/End: Original strand, 48861824 - 48862140
Alignment:
Q  220 cggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatag 319  Q
    |||||| || |||||||||| ||| ||||||| |||| ||||||||||| | |||||||| |||||||| |||||||||| | ||||||| |||||||||    
T  48861824 cggctaccccaaataataaacattaagctaccccaaataagtttagttg-caaaaattagcataaataataaagtaaaaa-actactacaagattgatag 48861921  T
Q  320 atttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaatta 419  Q
    ||||| || ||||||||||||| |||| || ||||||||||  ||| | ||| |||||||||||| ||||||||||||||||||| || || ||||||||    
T  48861922 atttatttgtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaatagtcgtagacaaatta 48862021  T
Q  420 aatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta----taatcgctcaattatggataaaattggtttct 515  Q
    ||  |||||||||||| ||||||||||| ||||  |||||||| |||||  |||||||||||||    ||| |   ||||||| ||| ||||||| ||||    
T  48862022 aacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctattattaaacagacaattattgatgaaattgggttct 48862121  T
Q  516 tgaaatacattttgtccaa 534  Q
    | |||| ||||||||||||    
T  48862122 tcaaatgcattttgtccaa 48862140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 187 - 484
Target Start/End: Original strand, 48840972 - 48841261
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||| |||  ||||||||| || | |||||||||| ||||||||||||| ||||||||||| |||||| |||   ||||  |||||||| ||||||    
T  48840972 ttattctttaattcgtcggtatgtatttatatccggctaccctaaataataaacattgagctaccccaaacacgttccattgta-aaaattagcataaat 48841070  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaata 386  Q
    || ||||||||||  |||||||| ||||||| |||||| || |||||||||||||||| |  | |||||||||     ||| ||| ||||||||||||||    
T  48841071 aataaagtaaaaaagttactacaagattgatggatttatttgtattggtttgatacttccgatctcaataaca-----agagaaacctttttcaacaata 48841165  T
Q  387 aaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    |||||||||||||||  | ||||| |||||||||||||| |||| |||| ||||||||||||||||  ||||||||  |||| |||||||||||||||    
T  48841166 aaaattatcaagaca--agtcatagacaaattaaatggataatgggtttcttgcaaataacctatttatttacatttgaaaagacattattaatctat 48841261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 281 - 484
Target Start/End: Complemental strand, 8745904 - 8745701
Alignment:
Q  281 ataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttca 380  Q
    |||||||| |||||||||| | ||| ||| || ||||||||||| || |||||||||||||||  |  | ||||||||||  ||||| ||  ||||||||    
T  8745904 ataaataataaagtaaaaaaaataccacaagactgatagatttatttgtattggtttgatactcccgatctcaataacaacaatagagaagcctttttca 8745805  T
Q  381 acaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaat 480  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | |||||||||||  ||||||||  |||| |||||||||||    
T  8745804 acaataaaaattatcaagacaatattcatagacaaattaaatggacaatgagtttcttacgaataacctatttatttacatttgaaaagacattattaat 8745705  T
Q  481 ctat 484  Q
    ||||    
T  8745704 ctat 8745701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 216 - 401
Target Start/End: Complemental strand, 17816235 - 17816050
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    |||||| |||||| ||||||||||| ||||||||    ||| ||||||||||||  |||||||| |||||| ||||||||||||  |||||||||| |||    
T  17816235 tatccgactatcccaaataataaattttgagctattctaaataagtttagttgtaaaaaattagcataaatgagaaagtaaaaaagttactacatgtttg 17816136  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagaca 401  Q
    |||||||||  | |||||||||| ||||| || | | |||||||| |||||| ||||||| |||||||||||||||||||||||||    
T  17816135 atagatttatatgtattggtttggtacttccaatcttaataacaactatagagaaaacttattcaacaataaaaattatcaagaca 17816050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 241 - 347
Target Start/End: Complemental strand, 856931 - 856825
Alignment:
Q  241 attgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgat 340  Q
    ||||||||| | |||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  856931 attgagctaacccaaacaagttcagttgtcgaaaattatgataaataagaaagtaaaaatattactacatgattggtagatttatttatattggtttgat 856832  T
Q  341 actttca 347  Q
    |||||||    
T  856831 actttca 856825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 6016907 - 6016736
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatgga 501  Q
    ||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||     ||| || |||||||||||    
T  6016907 cataaacaatttaaatgtacattgagtttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgga 6016808  T
Q  502 taaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||| || ||||||| ||||||  ||||||||| | |||| ||||||||||||||||| || |||||    
T  6016807 taaaattggcttattgaaatgcattttacccaacttttttaaatagctattgtcaatttttatcctttgttg 6016736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 43892664 - 43892531
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||||  |||    
T  43892664 tattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaataatcaagacaatagtcatagacaaattaaatgtgcaa 43892565  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  43892564 tgagtttcttgcaaataacctatttatttacatt 43892531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 407 - 572
Target Start/End: Original strand, 22786028 - 22786199
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatgga 501  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||||| |||||||||| |||| ||||||||||||||     ||| || || ||||||||    
T  22786028 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaacggtcgattatgga 22786127  T
Q  502 taaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||| |||||||||| ||||||  ||||||||| | |||| ||||||| |||| |||| || |||||    
T  22786128 taaaattggcttcttgaaatgcattttacccaacttttttaaatagctattgttaattcttatcctttgttg 22786199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 407 - 572
Target Start/End: Original strand, 2407155 - 2407327
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacatt-gaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||||| ||||||||| |||||| ||||||||||||||     ||| || |||||||| |    
T  2407155 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaaagacattattaatctatttagtaaacggtcaattattg 2407254  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    |||||||||  |||||||||| ||||||   |||||||| | |||| ||||||| |||| |||| || |||||    
T  2407255 ataaaattgacttcttgaaatgcattttactcaacttttttaaatagctattgttaattcttatcctttgttg 2407327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 16608633 - 16608526
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| |||| |||||| |||  | |||||||  |||||||||||||| |||| | |||||||| ||||||||||||| || |    
T  16608633 aaataataaatattgagctaccccaaaaaagtttggttaccgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagatttatttgt 16608535  T
Q  330 attggtttg 338  Q
    |||||||||    
T  16608534 attggtttg 16608526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 230 - 405
Target Start/End: Original strand, 11950431 - 11950588
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||| | | | |||||| ||||||||||| ||||| |||||||| ||||||||||||||||||| |||| |||       ||||||||| || |    
T  11950431 aaataataaacagttatctaccttaaacaagtttaattgtcgaaaattagcataaataagaaagtaaaaaaattattac-------atagatttatttgt 11950523  T
Q  330 attggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatat 405  Q
    ||||||||| ||||           ||||||||||||| ||||| ||||||||||||| ||||| |||||||||||    
T  11950524 attggtttggtact-----------taacaattatagagaaaacattttcaacaataataattaccaagacaatat 11950588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 404
Target Start/End: Complemental strand, 8762884 - 8762708
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgat--tgatagatttaatt 327  Q
    |||||| ||||||| ||||||| |||| || |||| ||||  |||||||  |||||||||||| | || | ||||||||  |||  ||||||||||| ||    
T  8762884 aaataaaaaatatttagctaccccaaataaatttatttgttaaaaattaacataaataagaaatttaagaaattactacgggatattgatagatttattt 8762785  T
Q  328 atattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaata 404  Q
     |||| |||  | |||||| || |||||||||| | | || |||||||||  || |||||||||| |||| ||||||    
T  8762784 gtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaata 8762708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 11950635 - 11950704
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttat 563  Q
    ||||| || ||||||| ||||||||  | |||||||||||||||||| |||| |||||||||||||||||    
T  11950635 ttatgaattaaattggcttcttgaagcagattttgtccaacttttctaaatagctattgtcaatttttat 11950704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 437 - 478
Target Start/End: Complemental strand, 5476447 - 5476406
Alignment:
Q  437 ttgcaaataacctattagtttacattgaaaaatacattatta 478  Q
    ||||||||||| |||| ||||||||||||||| |||||||||    
T  5476447 ttgcaaataacttatttgtttacattgaaaaagacattatta 5476406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 46694347 - 46694266
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatg 311  Q
    |||||| || |||| || ||||||||| || |||| ||||  |||||||| || ||||| ||| ||||||||||||||||||    
T  46694347 aaataaaaagtatttagttacctcaaataaatttatttgttgaaaattagcattaataaaaaaataaaaatattactacatg 46694266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 484
Target Start/End: Complemental strand, 8762664 - 8762620
Alignment:
Q  440 caaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    |||||||| |||| ||||||||||||||| ||||||||| |||||    
T  8762664 caaataacttatttgtttacattgaaaaagacattattagtctat 8762620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 6e-97; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 230 - 572
Target Start/End: Complemental strand, 38173037 - 38172696
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||| ||||||||||| |||||||||| | ||||  ||||||| ||||||||||||||||||||||||| ||||||||  |||        |||    
T  38173037 aaataataaacattgagctaccccaaacaagttcaattgttgaaaattaagataaataagaaagtaaaaatattattacatgat--ata--------tat 38172948  T
Q  330 attggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaat 429  Q
    |||||||||||||||||||| | ||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  38172947 attggtttgatactttcagtcttaataacaattatagagaaaactttgtcaacaataaaaattatcaagacaatagtcataaacaaattaaatgaacaat 38172848  T
Q  430 gagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta---------taatcgctcaattatggataaaattggtttcttgaaa 520  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||         ||| | |||||||||||||||||||||||| ||||||    
T  38172847 gagtttattgcaaataacctattagtttacattggagaatacattattaatctatatatttagtaaacactcaattatggataaaattggttttttgaaa 38172748  T
Q  521 tacattttgtccaacttttctaataactattgtcaatttttattctctgttg 572  Q
    | ||| |||||||| |||||||||| ||||||||||||||||| || |||||    
T  38172747 tgcatcttgtccaaattttctaatagctattgtcaatttttatcctttgttg 38172696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 246 - 484
Target Start/End: Complemental strand, 13541658 - 13541421
Alignment:
Q  246 gctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatacttt 345  Q
    |||||| |||| || |||||||| | |||||||| |||||||| |||||||||| ||||||| | |||||||| ||||| || |||||||||||||||||    
T  13541658 gctaccccaaataaatttagttg-caaaaattagcataaataataaagtaaaaaaattactataagattgatatatttatttgtattggtttgatacttt 13541560  T
Q  346 cagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaata 445  Q
    | || | ||||||||  ||||| ||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||    
T  13541559 cggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaata 13541460  T
Q  446 acctattagtttacattgaaaaatacattattaatctat 484  Q
    |||||||  ||||||||  |||| | |||||||||||||    
T  13541459 acctatttatttacatttgaaaagatattattaatctat 13541421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 246 - 484
Target Start/End: Original strand, 13682815 - 13683052
Alignment:
Q  246 gctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatacttt 345  Q
    |||||| |||| || |||||||| | |||||||| |||||||| |||||||||| ||||||| | |||||||| ||||| || |||||||||||||||||    
T  13682815 gctaccccaaataaatttagttg-caaaaattagcataaataataaagtaaaaaaattactataagattgatatatttatttgtattggtttgatacttt 13682913  T
Q  346 cagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaata 445  Q
    | || | ||||||||  ||||| ||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||    
T  13682914 cggtcttaataacaacaatagagaaatctttttcaacaataaaaattatcaagacaatagtcatagataaattaaatggacaatgagtttcttgcaaata 13683013  T
Q  446 acctattagtttacattgaaaaatacattattaatctat 484  Q
    |||||||  ||||||||  |||| | |||||||||||||    
T  13683014 acctatttatttacatttgaaaagatattattaatctat 13683052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 200 - 484
Target Start/End: Original strand, 43115018 - 43115300
Alignment:
Q  200 ggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaa 299  Q
    |||||||||| || ||||||||| ||  | |||||||||||||||||||||||||||||| ||  |||||  |||||||| |||||||| ||||||||||    
T  43115018 ggtcggtatgtatttttatccggatactccaaataataaatattgagctacctcaaacaaattccgttgta-aaaattagcataaataataaagtaaaaa 43115116  T
Q  300 tattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaaga 399  Q
     ||||||||| |||||||||||||| || |||| ||||||||||  |  | ||||||||||  |||||  ||  ||||||||||||||||||||||||||    
T  43115117 aattactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaacaataga-gaacttttttcaacaataaaaattatcaaga 43115215  T
Q  400 caatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||| ||||  | ||| |||||||||| ||||||| ||||||||||| ||||  ||||||||  |||| |||||||||||||||    
T  43115216 caatagtcattgaaaaactaaatggacagtgagtttcttgcaaataacatatttatttacatttgaaaaaacattattaatctat 43115300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 326 - 483
Target Start/End: Original strand, 40118065 - 40118219
Alignment:
Q  326 ttatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatgga 425  Q
    ||||||||||||||||||| ||  ||||||||||||||||||  |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  40118065 ttatattggtttgatacttccaaattcaataacaattataga--aaactttttcaacaataaaaattatcaagataatagtcataaacaaattaaatgga 40118162  T
Q  426 caatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta 483  Q
    |||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||    
T  40118163 caatgaatttattgcaaataatctattagtttacattg-aaaatatattattaatcta 40118219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 229 - 427
Target Start/End: Original strand, 32415741 - 32415939
Alignment:
Q  229 taaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaatta 328  Q
    ||||||||||| |||||| |||| |||| || || ||||||| |||||||  |||||||||||||||||||||||||||||| ||||||||||||| |||    
T  32415741 taaataataaacattgagttaccccaaataaattaagttgtcaaaaattaatataaataagaaagtaaaaatattactacatcattgatagatttattta 32415840  T
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggaca 427  Q
    |||||||||||||||| | || ||||||||||||||| | ||||| |||||   | ||| |||||| ||||||||| ||||||||||||||||| ||||    
T  32415841 tattggtttgatacttccggtctcaataacaattatatagaaaaccttttcggtagtaacaattattaagacaataatcataaacaaattaaattgaca 32415939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 230 - 563
Target Start/End: Original strand, 41570264 - 41570603
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| |||| ||||| ||||| | |||||| | ||| |||||||||| |||| |||| |||||||||||||||| |   | |    
T  41570264 aaataataaatattgagctaccccaaaaaagttcagttgccgaaaatttgcatatataagaaagttaaaaaattattacatgattgatagatatg--tgt 41570361  T
Q  330 attggtttgatactttcagtttcaataacaattata--gataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggaca 427  Q
    |||||||||  |||||| || | | |||||| ||||  || ||||||||||||||||||| ||||||||||  |||| ||||||||| ||||||||   |    
T  41570362 attggtttggaactttcggtcttattaacaactatatagagaaaactttttcaacaataacaattatcaagtaaatagtcataaacatattaaatgagta 41570461  T
Q  428 atgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatggat-aaaattggtttcttgaaat 521  Q
    |||||||| |||||||||||||||| |||||| || ||||| |||  |||||||||     ||| |  |||||||||||| |||||||| |||||||||     
T  41570462 atgagtttcttgcaaataacctatttgtttacctt-aaaaaaacaacattaatctattttgtaaacaatcaattatggataaaaattggcttcttgaaac 41570560  T
Q  522 acattttgtccaacttttct-aataactattgtcaatttttat 563  Q
     ||||| ||||||||||||| |||| |||| ||||||| ||||    
T  41570561 gcatttagtccaacttttctaaatagctatggtcaattcttat 41570603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 296 - 543
Target Start/End: Complemental strand, 38699939 - 38699688
Alignment:
Q  296 aaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatc 395  Q
    |||| ||||||||| |||||| ||||||| || |||| |||||||||| ||  | ||||||||||   |||| |||  ||||||||||||||||||||||    
T  38699939 aaaaaattactacaagattgacagatttatttgtatttgtttgatactctcgatctcaataacaacagtagagaaacatttttcaacaataaaaattatc 38699840  T
Q  396 aagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta----taatcgct 491  Q
    ||||||||| ||||  |||||||||||||| | ||||||| ||||||||||||||||  ||||||||  |||| ||||||||||||||    ||| |  |    
T  38699839 aagacaatagtcatggacaaattaaatggagagtgagtttcttgcaaataacctatttatttacatttgaaaagacattattaatctattattaaacagt 38699740  T
Q  492 caattatggataaaattggtttcttgaaatacattttgtccaacttttctaa 543  Q
    | ||||| ||| ||||||| |||||||||  ||||||| ||||| |||||||    
T  38699739 ctattattgatgaaattgggttcttgaaacgcattttgcccaacgtttctaa 38699688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 4072369 - 4072236
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||||| || ||||||||||  ||| | ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  4072369 tattggtttgatactttccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 4072270  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  4072269 tgagtttcttgcaaataacctatttatttacatt 4072236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 216 - 411
Target Start/End: Complemental strand, 6115200 - 6115005
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    ||||| |||| | ||||||||||| ||||| ||||| |||||||||| ||||| | |||| ||  ||||||||||||||||||| |||| ||||| ||||    
T  6115200 tatccagctaccataaataataaacattgaactaccccaaacaagttcagttgccaaaaaataacataaataagaaagtaaaaaaattattacatcattg 6115101  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
    ||||||||| || |||||||||| |||||    | ||||||||||||||||| | |||||||| ||||||||||| |||||||||| || ||||||    
T  6115100 atagatttatttgtattggtttggtacttctgatctcaataacaattatagagagaacttttttaacaataaaaactatcaagacagtagtcataa 6115005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 399 - 563
Target Start/End: Original strand, 18881850 - 18882019
Alignment:
Q  399 acaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctca 493  Q
    |||||| ||||||||| ||||||||| |||||||||| |||||||||||||||| |||||||||| |||| ||||||||||||||     ||| |  |||    
T  18881850 acaatagtcataaacatattaaatgggcaatgagtttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatca 18881949  T
Q  494 attatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttat 563  Q
    ||||||||||||||||  |||||||||| |||||||||||| |||||| ||||  ||||||||||||||||    
T  18881950 attatggataaaattgccttcttgaaat-cattttgtccaaattttctaaatagttattgtcaatttttat 18882019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 21441735 - 21441602
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | ||| ||||||||||||||||||| ||||| |||||| ||||| |||||||||||| ||||    
T  21441735 tattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaaaacaatagtcatagacaaattaaatgtacaa 21441636  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  21441635 tgagtttcttgcaaataacctatttatttacatt 21441602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 407 - 560
Target Start/End: Original strand, 12491566 - 12491726
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  12491566 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 12491665  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttt 560  Q
    ||| ||||||||||||||||| ||||||   |||||||| | |||| ||||||||||||||    
T  12491666 atacaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttt 12491726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 41323323 - 41323190
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | |||  |||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  41323323 tattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 41323224  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| |||||||||| |||||  ||||||||    
T  41323223 tgagtttcttgcaaataaactatttatttacatt 41323190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 13741579 - 13741472
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| ||| ||||||| |||| | |||||||  |||||||||||||| |||| | |||||||| ||||||||||||| ||||    
T  13741579 aaataataaatattgagctaccccaagcaagtttggttgccgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagatttatttat 13741481  T
Q  330 attggtttg 338  Q
    |||||||||    
T  13741480 attggtttg 13741472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 131 - 324
Target Start/End: Original strand, 40116488 - 40116676
Alignment:
Q  131 acaggggtggttccttgcatgttggaggggtagctttggctacccnnnnnnnnnnnttattcttcaatcggtcggtatgcatatttatccggctatccta 230  Q
    ||||||| |||||||| |||||||||||||||||||||||||||            || || || ||| |||||||||| || | ||||||  ||  |||    
T  40116488 acaggggcggttcctttcatgttggaggggtagctttggctacc-----ttttttttttttttttaattggtcggtatgtatttatatccgattactcta 40116582  T
Q  231 aataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagattta 324  Q
    ||||| ||||||||| ||||   ||||||||| ||||||| ||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  40116583 aataaaaaatattgaactactctaaacaagttcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactatatgattgatagattta 40116676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 239 - 442
Target Start/End: Complemental strand, 31911289 - 31911086
Alignment:
Q  239 atattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttg 338  Q
    ||||| ||||||| |||| || |||| ||||  ||| |||| |||||||||||| || ||||||||||| |||||||||||||||| || ||||  ||||    
T  31911289 atatttagctaccccaaataaatttatttgttcaaagttagcataaataagaaaatataaatattactatatgattgatagatttatttgtattaatttg 31911190  T
Q  339 atactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttatt 438  Q
    ||| ||||||| |||| || || |||||| |||||||||  || ||||||||||  | | |||||| ||| ||| ||||||||   | ||||||||| ||    
T  31911189 atagtttcagtctcaacaataaatatagagaaaacttttataagaataaaaatttgctaaacaatagtcaaaaataaattaaacaaataatgagtttctt 31911090  T
Q  439 gcaa 442  Q
    ||||    
T  31911089 gcaa 31911086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 1233811 - 1233704
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| ||| ||||||| |||| | |||||||  |||||||||||||| |||| | |||||||| ||||||||||||| || |    
T  1233811 aaataataaatattgagctaccccaagcaagtttggttgccgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagatttatttgt 1233713  T
Q  330 attggtttg 338  Q
    |||||||||    
T  1233712 attggtttg 1233704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 13641167 - 13641060
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| ||| ||||||| |||| | |||||||  |||||||||||||| |||| | |||||||| ||||||||||||| || |    
T  13641167 aaataataaatattgagctaccccaagcaagtttggttgccgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagatttatttgt 13641069  T
Q  330 attggtttg 338  Q
    |||||||||    
T  13641068 attggtttg 13641060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 230 - 393
Target Start/End: Original strand, 18881336 - 18881503
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg----atagatttaa 325  Q
    |||||||||| ||||| |||||||||| |||||| ||||   |||||||| ||| |||||||||| |||  |||||||||||||||    ||| ||| |     
T  18881336 aaataataaacattgaactacctcaaataagtttggttgctgaaaattagcatagataagaaagttaaacaattactacatgattgatatataaattcat 18881435  T
Q  326 ttatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaatta 393  Q
    || ||||| ||||  |||| | |||||||||||||  ||||| ||||||||||||| |||||||||||    
T  18881436 ttgtattgatttggaacttccggtttcaataacaacgatagagaaaactttttcaataataaaaatta 18881503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 5808851 - 5808775
Alignment:
Q  296 aaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaa 372  Q
    |||| |||||||||| ||||||||||| | || |||||| |||||||||| ||| |||||||||| |||||| ||||    
T  5808851 aaaaaattactacatcattgatagattaatttgtattgggttgatacttttagtctcaataacaactatagagaaaa 5808775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 415 - 452
Target Start/End: Original strand, 33613707 - 33613744
Alignment:
Q  415 aattaaatggacaatgagtttattgcaaataacctatt 452  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  33613707 aattaaatggacaatgagtttcttgcaaataacctatt 33613744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 25338156 - 25338077
Alignment:
Q  258 aagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttg 338  Q
    |||||| |||| | |||||||  |||||||||||||| |||| | |||||||| ||||||||||||| || ||||||||||    
T  25338156 aagtttggttgccgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagatttatttgtattggtttg 25338077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 187 - 462
Target Start/End: Complemental strand, 7195 - 6920
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    ||||||||||||||||||||||| || | |||||| ||| || |||||||||| |||||| |||| |||||||||| ||||||| ||||||| |||||||    
T  7195 ttattcttcaatcggtcggtatgtatttatatccgactaccccaaataataaacattgagttaccccaaacaagttcagttgtcgaaaattaagataaat 7096  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaata 386  Q
    || ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| || |||||||||||||  |||||||| |||||||||    
T  7095 aaaaaagtaaaaatattattacgtgattgatagatttatttatattggtttgatactttcagtctcgataacaattatagggaaaactttgtcaacaata 6996  T
Q  387 aaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacatt 462  Q
    |||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||    
T  6995 aaaattatcaagacaatagtcataaacagattaaatgaacaataagtttattgcaaataacatattagtttacatt 6920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 3e-80; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 187 - 572
Target Start/End: Complemental strand, 16908936 - 16908548
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||||| | ||| |||||  || | |||||||||| |  |||||||||||||||||||||| ||||||| || ||||||  || ||||  |||| |    
T  16908936 ttattcttcatttggttggtatatatttatatccggctacctcaaataataaatattgagctacc-caaacaaattcagttgttgaatattaacataagt 16908838  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaata 386  Q
    |||||||||||||||||| || |||||||||||||||  ||||||||||||||||||| | || ||||||||||||||||| ||||| |||||||| |||    
T  16908837 aagaaagtaaaaatattaatatatgattgatagatttgtttatattggtttgatacttccggtctcaataacaattatagagaaaac-ttttcaacgata 16908739  T
Q  387 aaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta--- 483  Q
    |||||||| ||||||||| | ||||| |||||||||||||||| ||||| || ||| ||||||||| ||||||||||||||||||||||||||||||       
T  16908738 aaaattattaagacaatagttataaataaattaaatggacaat-agtttctttcaagtaacctatttgtttacattgaaaaatacattattaatctattt 16908640  T
Q  484 --taatcgctcaattatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
      ||| |  ||||||||||||||| |||| || ||||||| ||||||  ||||||||||| ||||| |||||||||||||||| || |||||    
T  16908639 agtaaacagtcaattatggataaatttggctttttgaaatgcattttacccaacttttctaaataattattgtcaatttttatcctttgttg 16908548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 188 - 367
Target Start/End: Original strand, 22098916 - 22099095
Alignment:
Q  188 tattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaata 287  Q
    |||| ||||||||||||||||| || | ||| |||||| || |||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||||    
T  22098916 tatttttcaatcggtcggtatgtatttatattcggctaccccaaataaaaaatattgagctaccccaaacaagtttagttgtcgaaaattaagataaata 22099015  T
Q  288 agaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattataga 367  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||||||||||||||    
T  22099016 agaaagtaaaaatattactacatgattgatagatatatttatattggtttgatactttcaatctcaataacaattataga 22099095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 230 - 484
Target Start/End: Complemental strand, 41640309 - 41640055
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaata-ttactacatgattgatagatttaatta 328  Q
    |||||||||| |||||| ||||  ||| ||||||||||| | ||| |||| |||||||| |||||||||| | |||||||| |||||||||||||| ||     
T  41640309 aaataataaacattgagttaccctaaataagtttagttg-caaaagttagcataaataataaagtaaaaaaaattactacaagattgatagatttatttg 41640211  T
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | ||| ||||||||||||||||||| ||||||| |||| ||||| |||||||||||| ||||    
T  41640210 tattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagaaaatagtcatagacaaattaaatgtacaa 41640111  T
Q  429 tgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||| ||||||||||| ||||  ||||||||  |||| |||||||||||||||    
T  41640110 tgagtttcttgcaaataacatatttatttacatttgaaaagacattattaatctat 41640055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 231 - 563
Target Start/End: Complemental strand, 19949089 - 19948758
Alignment:
Q  231 aataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattata 330  Q
    ||||||||| |||||||||  ||||| ||||||||||||| |||||||  |||||||| ||| |||||| |||||||||| |||||||| |||| || ||    
T  19949089 aataataaacattgagctatttcaaataagtttagttgtcgaaaattaacataaataaaaaattaaaaaaattactacataattgataggtttatttgta 19948990  T
Q  331 ttggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatg 430  Q
     ||||||| || |||||||   |||||||| |||||| ||||   ||  |||||| |||||||||||||||||| ||||||||  |||||||||||||||    
T  19948989 atggtttggtattttcagtcgaaataacaactatagaaaaaaaaatt--aacaattaaaattatcaagacaatagtcataaacctattaaatggacaatg 19948892  T
Q  431 agtttattgcaaataacctattagtttacattgaaaaatacattattaatc-----tataatcgctcaattatggataaaattggtttcttgaaatacat 525  Q
    | ||| |||||||||| ||| | |||||||||| | || | ||||||| ||     | ||| || | |||||||||||||    | |||||||||| |||    
T  19948891 aatttcttgcaaataatctagttgtttacattggagaaaatattattattccattttgtaaacgattaattatggataaa----gcttcttgaaatgcat 19948796  T
Q  526 tttgtccaacttttcta-ataactattgtcaatttttat 563  Q
    |||| |||||||||||| |||  ||||||||||||||||    
T  19948795 tttg-ccaacttttctatatagttattgtcaatttttat 19948758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 187 - 484
Target Start/End: Original strand, 34033870 - 34034182
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||| |||  ||||||||| ||   |||| ||||| || || ||||||| |||  ||||||||||||||||||||||| | |||||||| ||||||    
T  34033870 ttattcttgaattagtcggtatgtattgatatctggctaccccaattaataaacatttggctacctcaaacaagtttagttg-caaaaattagcataaat 34033968  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagat----------------aa 370  Q
    || |||||||||| | |||| ||  ||| ||||||||| || |||||||||||||||||| || | ||||||||  |||| |                ||    
T  34033969 aataaagtaaaaaaactactccaaaattaatagatttatttgtattggtttgatactttcggtcttaataacaacaataggtcttaataacaatacaaaa 34034068  T
Q  371 aactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaata 470  Q
    | ||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| ||||  ||||||||  |||| |    
T  34034069 acctttttcaacaataaaaattatcaagagaatagtcatagacaaattaaatggacaatgagtttcttgcaaataacttatttatttacatttgaaaaga 34034168  T
Q  471 cattattaatctat 484  Q
    ||||||||||||||    
T  34034169 cattattaatctat 34034182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 329 - 462
Target Start/End: Complemental strand, 17769118 - 17768985
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  17769118 tattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 17769019  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  17769018 tgagtttcttgcaaataacctatttatttacatt 17768985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 13517502 - 13517635
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | |||  |||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  13517502 tattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 13517601  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  13517602 tgagtttcttgcaaataacctatttatttacatt 13517635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 374 - 484
Target Start/End: Complemental strand, 17696007 - 17695897
Alignment:
Q  374 tttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacat 473  Q
    ||||||||||||||||||||||||||||||| ||||  ||||| |||||||||| ||||||| ||||||||||| ||||  ||||||||  |||| ||||    
T  17696007 tttttcaacaataaaaattatcaagacaatagtcattgacaaactaaatggacagtgagtttcttgcaaataacttatttatttacatttgaaaaaacat 17695908  T
Q  474 tattaatctat 484  Q
    |||||||||||    
T  17695907 tattaatctat 17695897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 222 - 340
Target Start/End: Original strand, 14521475 - 14521593
Alignment:
Q  222 gctatcctaaataataaatattgagctacctcaaacaagtttagtt-gtctaaaattaggataaataagaaagtaaaaatattactacatgattgataga 320  Q
    ||||||| ||||||||||||||||| |||| |||| || ||| ||| ||| |||||||| ||||||||||| | ||||| ||||||||||||||||||||    
T  14521475 gctatcccaaataataaatattgagttaccccaaataaatttggtttgtcaaaaattagcataaataagaaggaaaaaa-attactacatgattgataga 14521573  T
Q  321 tttaattatattggtttgat 340  Q
    | || |||||||||||||||    
T  14521574 tatatttatattggtttgat 14521593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 310 - 563
Target Start/End: Complemental strand, 40361197 - 40360942
Alignment:
Q  310 tgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcat 409  Q
    |||||||||||||||  | ||| |||||| |||||   || |||| |||| ||||||| |||||||||||||||| |||||||||||| | |||| |||     
T  40361197 tgattgatagatttatctttatcggtttggtacttctggtctcaacaacatttatagagaaaactttttcaacaacaaaaattatcaacaaaatagtcag 40361098  T
Q  410 aaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatggataa 504  Q
      ||  ||||||| |  ||||||||| |||||||||||||||| ||||| ||   |||| ||||||||||||||     ||| |  ||||||||||||||    
T  40361097 ggac--attaaataggaaatgagtttcttgcaaataacctatttgtttagatcataaaagacattattaatctattttgtaaacagtcaattatggataa 40361000  T
Q  505 aattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttat 563  Q
    |||||   ||||||||  ||||||| |||| |||| | |||||||||| |||||||||||    
T  40360999 aattg--atcttgaaaagcattttgcccaaattttttaaataactattttcaatttttat 40360942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 407 - 528
Target Start/End: Complemental strand, 40528255 - 40528129
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatgga 501  Q
    |||||||||||||| |||| | ||||||| || ||||||||||||| ||||||||||||||| |||||||||||| |     ||| || |||| ||| ||    
T  40528255 cataaacaaattaagtggatattgagtttcttacaaataacctatttgtttacattgaaaaagacattattaatcaatttagtaaacgatcaaatataga 40528156  T
Q  502 taaaattggtttcttgaaatacatttt 528  Q
    ||||||||| |||||||||| ||||||    
T  40528155 taaaattggcttcttgaaatgcatttt 40528129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 204 - 337
Target Start/End: Complemental strand, 17698797 - 17698666
Alignment:
Q  204 ggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatatt 303  Q
    |||||| || ||||| ||| ||||  |||||||||||||||||||| | ||||||| ||| |||| | |||||||| |||||||| |||||||||| |||    
T  17698797 ggtatgtatttttattcggttatctcaaataataaatattgagctatcccaaacaaatttcgttg-caaaaattagcataaataataaagtaaaaa-att 17698700  T
Q  304 actacatgattgatagatttaattatattggttt 337  Q
    |||||| |||||||||||||| || |||| ||||    
T  17698699 actacaagattgatagatttatttgtatttgttt 17698666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 22099209 - 22099273
Alignment:
Q  356 aacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaa 421  Q
    |||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||| |||||||||    
T  22099209 aacaattatagagaaaactttt-caacaataaaagttatcaagacaatagtcataatcaaattaaa 22099273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 2065722 - 2065657
Alignment:
Q  228 ctaaataataaa-tattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaa 292  Q
    |||||||||||| ||||||| ||||| ||| ||||||||||||| |||||||| ||||||||||||    
T  2065722 ctaaataataaaatattgagttaccttaaataagtttagttgtcgaaaattagtataaataagaaa 2065657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 495 - 563
Target Start/End: Original strand, 7008999 - 7009068
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaacttt-tctaataactattgtcaatttttat 563  Q
    |||||||||||||||||||||||||| | ||||||||||||||| |  ||||  ||||||||||||||||    
T  7008999 ttatggataaaattggtttcttgaaacagattttgtccaactttgttaaatagatattgtcaatttttat 7009068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 369
Target Start/End: Original strand, 42352998 - 42353139
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttag-ttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaatta 328  Q
    |||||||||||||||||||||| |||| ||  || | ||||| |||||||| |||||||||||   ||||| ||| |||||||||||| |||| || |||    
T  42352998 aaataataaatattgagctaccccaaataaacttggtttgtcgaaaattagcataaataagaa---aaaaaaattgctacatgattgacagatatattta 42353094  T
Q  329 t----attggtttgatactttcagtttcaataacaattatagata 369  Q
    |    ||| | ||||||||||| || |||||||||| ||||||||    
T  42353095 tacggatttgattgatactttctgtctcaataacaactatagata 42353139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 3e-65; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 360 - 561
Target Start/End: Original strand, 34659348 - 34659553
Alignment:
Q  360 attatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttac 459  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  34659348 attatagagaaaactttt-caacaataaaaattatcaagacaatagtcataaacaaattaaatggataatgagtttattgcaaataacttattagtttac 34659446  T
Q  460 attgaaaaatacattattaatcta-----taatcgctcaattatggataaaattggtttcttgaaatacattttgtccaacttttctaataactattgtc 554  Q
    ||| ||||||||||||||||||||     ||| | ||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| | |||||     
T  34659447 atttaaaaatacattattaatctatttagtaaacactcaattatagataaaattggtttcttgaaatgcattttgtccaaattttctaatagccattgta 34659546  T
Q  555 aattttt 561  Q
    |||||||    
T  34659547 aattttt 34659553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 187 - 484
Target Start/End: Original strand, 37202603 - 37202900
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||||||| ||| |||||  || | ||||| |||  || |||||||||||||| ||| | ||||||||| |||||||||| |||||||  |||| |    
T  37202603 ttattcttcaattggttggtatatatttatatcctgctgccccaaataataaatattaagccatctcaaacaaatttagttgtcgaaaattaacataagt 37202702  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaata 386  Q
    |||||||||||| ||||| |||||||| |||| ||||| |||||||||||||||||||    | ||||||| |||||| |  |||| |||||||||| ||    
T  37202703 aagaaagtaaaattattaatacatgatggataaatttatttatattggtttgatacttctgctctcaataataattatggtgaaaattttttcaacatta 37202802  T
Q  387 aaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||| |||| ||||||||| |||||||||||||||||||||| | ||||| |||||||||| ||||| ||||||||   |||| |||||||||||||||    
T  37202803 aaagttattaagacaatagtcataaacaaattaaatggacattcagtttcttgcaaataatctatttgtttacatcagaaaaaacattattaatctat 37202900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 200 - 543
Target Start/End: Complemental strand, 29716113 - 29715769
Alignment:
Q  200 ggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaa 299  Q
    |||||||||| || ||||| |||||| || |||||||||||||||||||||| ||||||| ||| |||| | |||||||| ||| |||| ||| ||||||    
T  29716113 ggtcggtatgtatttttattcggctaccccaaataataaatattgagctaccccaaacaaatttcgttg-caaaaattagcatacataataaa-taaaaa 29716016  T
Q  300 tattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaaga 399  Q
     ||||||||| ||| |||||||||| || |||| |||||||||| |   | ||||||||||  ||||| |||  ||||||||||||||||||||||||||    
T  29716015 -attactacaagatggatagatttatttgtatttgtttgatactcttgatctcaataacaacaatagaaaaacttttttcaacaataaaaattatcaaga 29715917  T
Q  400 caatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta----taatcgctcaat 495  Q
    ||||| ||||| |||||||||||||||  ||||||| ||| ||||||||||||  ||||||||  |||| ||||||||||||||    ||| |  || ||    
T  29715916 caatagtcatagacaaattaaatggacggtgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctattattaaacagtctat 29715817  T
Q  496 tatggataaaattggtttcttgaaatacattttgtccaacttttctaa 543  Q
    ||| ||| ||||||| |||||||||  ||||||| ||||| |||||||    
T  29715816 tattgatgaaattgggttcttgaaacgcattttgcccaacgtttctaa 29715769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 188 - 367
Target Start/End: Original strand, 34658902 - 34659081
Alignment:
Q  188 tattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaata 287  Q
    ||||||||||| |||||||||| || | ||| | |||| ||||||||||| | ||||||||||  |||||||||| ||||||  ||||||| ||||||||    
T  34658902 tattcttcaattggtcggtatgtatttatattccgctaccctaaataatatacattgagctactccaaacaagttcagttgttgaaaattatgataaata 34659001  T
Q  288 agaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattataga 367  Q
    |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||| || ||||||| |||||||||    
T  34659002 agaaagtaaaaatattactacatgattgatcgatttatatatattggtttgatactttcggtctcaataataattataga 34659081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 331 - 484
Target Start/End: Complemental strand, 46211817 - 46211664
Alignment:
Q  331 ttggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatg 430  Q
    |||||||||||||||| || ||||||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  46211817 ttggtttgatactttccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 46211718  T
Q  431 agtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||| ||||||||||||||||  ||||||||  |||| |||||||||||||||    
T  46211717 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctat 46211664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 216 - 411
Target Start/End: Original strand, 25591966 - 25592161
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    ||||| |||| || |||||||||||||||||||||  |||||||||| ||||| | ||||  |  ||||||||||||||||||| |||| ||||| ||||    
T  25591966 tatccagctaccccaaataataaatattgagctactccaaacaagttcagttgccaaaaaacaacataaataagaaagtaaaaaaattattacatcattg 25592065  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
    ||||||||| || ||||| |||| ||||| |  | ||||||||||||||||| | |||||||||||||||||||| |||||||| |||| ||||||    
T  25592066 atagatttatttgtattgatttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagataatagtcataa 25592161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 329 - 484
Target Start/End: Complemental strand, 48609247 - 48609092
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  48609247 tattggtttgatacttcccgtctcaataacaacaataaagaaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 48609148  T
Q  429 tgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||| ||||||||||||||||  || |||||  |||| |||||||||||||||    
T  48609147 tgagtttcttgcaaataacctatttattaacatttgaaaacacattattaatctat 48609092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 407 - 572
Target Start/End: Original strand, 13465458 - 13465630
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  13465458 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 13465557  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||||||||||||||| ||||||   |||||||| | |||| ||||||||||||||||| || |||||    
T  13465558 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttgttg 13465630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 331 - 484
Target Start/End: Original strand, 758835 - 758988
Alignment:
Q  331 ttggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatg 430  Q
    |||||||||||||| | || ||||||||||  ||| | ||| ||||||||| ||||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  758835 ttggtttgatacttcccgtctcaataacaacgataaagaaacctttttcaataataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 758934  T
Q  431 agtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||| |||||||||| |||||  ||||||||  |||| |||||||||||||||    
T  758935 agtttcttgcaaataatctatttatttacatttgaaaagacattattaatctat 758988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 407 - 572
Target Start/End: Original strand, 28491315 - 28491487
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataaccta-ttagtttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||| ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  28491315 cataaacaaattaaatggacattgagtttcttgcaaataacctatttattttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 28491414  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||||||||||||||| ||||||   ||| |||| | |||| ||||||||||||||||| || |||||    
T  28491415 ataaaattggtttcttgaaatgcattttacacaaattttttaaatagctattgtcaatttttatcctttgttg 28491487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 39719883 - 39720016
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | |||  |||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  39719883 tattggtttgatacttcccgtctcaataacaacaataaagaaacatttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 39719982  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  39719983 tgagtttcttgcaaataacctatttatttacatt 39720016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 335 - 484
Target Start/End: Complemental strand, 83768 - 83618
Alignment:
Q  335 tttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatgg-acaatgagt 433  Q
    |||||||||| | || ||||||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| ||||||||||    |||||||||    
T  83768 tttgatacttcccgtctcaataacaacgataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaaacatacaatgagt 83669  T
Q  434 ttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    || ||| ||||||||||||  ||||||||  |||| |||||||||||||||    
T  83668 ttcttgtaaataacctatttatttacatttgaaaagacattattaatctat 83618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 224 - 341
Target Start/End: Original strand, 37048897 - 37049014
Alignment:
Q  224 tatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagattt 323  Q
    ||||||||||||||||||||||| ||  ||||||||||||  ||||| ||||| || || ||||||||||| |||| |||||||||| ||||||||| ||    
T  37048897 tatcctaaataataaatattgagataattcaaacaagtttgattgtcgaaaatcagcatgaataagaaagtgaaaaaattactacatcattgatagactt 37048996  T
Q  324 aattatattggtttgata 341  Q
    | || |||||||||||||    
T  37048997 atttgtattggtttgata 37049014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 45855415 - 45855522
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| |||| |||||| |||||| |||||||  |||||||||||||| |||| | |||||||| ||||||||| ||| || |    
T  45855415 aaataataaatattgagctaccccaaataagtttggttgtcgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagacttatttgt 45855513  T
Q  330 attggtttg 338  Q
    |||||||||    
T  45855514 attggtttg 45855522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 411
Target Start/End: Original strand, 14046865 - 14047046
Alignment:
Q  230 aaataataaatatt-gagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatat-tactacatgattgatagatttaatt 327  Q
    ||||||||||| || ||||||||  ||||||||||| ||  | |||||||| |||  |||||||||||||| |  || ||||||||| ||| ||||| ||    
T  14046865 aaataataaatttttgagctaccctaaacaagtttaattaacgaaaattagcatatttaagaaagtaaaaaaaaatattacatgatt-atatatttattt 14046963  T
Q  328 atattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
     |||| ||||  ||||||| || ||||||||||||||||| || |||||| |||||||||||| ||| ||||||||| ||||||    
T  14046964 gtattagttttgtactttcggtctcaataacaattatagaaaagactttt-caacaataaaaactattaagacaatagtcataa 14047046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 230 - 411
Target Start/End: Original strand, 14356895 - 14357076
Alignment:
Q  230 aaataataaatatt-gagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatat-tactacatgattgatagatttaatt 327  Q
    ||||||||||| || ||||||||  ||||||||||| ||  | |||||||| |||  |||||||||||||| |  || ||||||||| ||| ||||| ||    
T  14356895 aaataataaatttttgagctaccctaaacaagtttaattaacgaaaattagcatatttaagaaagtaaaaaaaaatattacatgatt-atatatttattt 14356993  T
Q  328 atattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
     |||| ||||  ||||||| || ||||||||||||||||| || |||||| |||||||||||| ||| ||||||||| ||||||    
T  14356994 gtattagttttgtactttcggtctcaataacaattatagaaaagactttt-caacaataaaaactattaagacaatagtcataa 14357076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 311 - 564
Target Start/End: Original strand, 17949051 - 17949310
Alignment:
Q  311 gattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaa---ttatcaagacaatattc 407  Q
    |||||||||| ||| || ||||  ||||| |||||| || |||| || || ||| |||||||| |||| || ||||||||   || ||||||||||| ||    
T  17949051 gattgatagacttatttgtattaatttgacactttcggtctcaacaataaatattgataaaacatttttaagaataaaaaaaattgtcaagacaatactc 17949150  T
Q  408 ataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta--taat---cgctcaattatggat 502  Q
    |  ||||||| |||  || ||||||||| |||||| |||| | || |||||||||||| |||||||||| | ||||  ||||   |  ||||||||| ||    
T  17949151 a--aacaaatcaaacagataatgagtttcttgcaattaacttgtttgtttacattgaataatacattataagtctatttaatatacaatcaattatgaat 17949248  T
Q  503 aaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttatt 564  Q
    |||||||  || ||||||||| || ||| |||||||||| ||||| |||||||||||||||||    
T  17949249 aaaattgactt-ttgaaatactttatgttcaacttttctaaataattattgtcaatttttatt 17949310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 27097106 - 27097183
Alignment:
Q  296 aaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaac 373  Q
    |||| |||||||||| ||||||||||| | || ||||||||||||||||| ||| |||||||||| |||||| |||||    
T  27097106 aaaaaattactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactatagagaaaac 27097183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 373
Target Start/End: Complemental strand, 27181197 - 27181120
Alignment:
Q  296 aaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaac 373  Q
    |||| |||||||||| ||||||||||| | || ||||||||||||||||| ||| |||||||||| |||||| |||||    
T  27181197 aaaaaattactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactatagagaaaac 27181120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 37712930 - 37713006
Alignment:
Q  296 aaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaa 372  Q
    |||| |||||||||| ||||||||||| | || ||||||||||||||||| ||| |||||||||| |||||| ||||    
T  37712930 aaaaaattactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactatagagaaaa 37713006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 495 - 573
Target Start/End: Original strand, 25592225 - 25592304
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttgc 573  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||| | |||| |||| ||||||||||||| | ||||||    
T  25592225 ttatggataaaattgggttcttgaaacacattttatccaacttttttaaatagctatcgtcaatttttattatttgttgc 25592304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 14047109 - 14047153
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaactttt 539  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||    
T  14047109 ttatggctaaaattggtttcttgaaacacattttgtccaactttt 14047153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 14357139 - 14357183
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaactttt 539  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||    
T  14357139 ttatggctaaaattggtttcttgaaacacattttgtccaactttt 14357183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 484
Target Start/End: Complemental strand, 25439658 - 25439583
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatctat 484  Q
    ||||||||||||||||||||| ||||||| |||||   |||||||| | ||||||||| |||| |||||||||||||||    
T  25439658 cataaacaaattaaatggacattgagtttcttgca---aacctatttgttttacattggaaaagacattattaatctat 25439583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 276
Target Start/End: Original strand, 27097058 - 27097104
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaat 276  Q
    |||||||||||||||||||||| ||||||| ||| |||||| |||||    
T  27097058 aaataataaatattgagctaccccaaacaaatttggttgtcgaaaat 27097104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 27181245 - 27181199
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaat 276  Q
    |||||||||||||||||||||| ||||||| ||| |||||| |||||    
T  27181245 aaataataaatattgagctaccccaaacaaatttggttgtcgaaaat 27181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 372
Target Start/End: Original strand, 37003695 - 37003760
Alignment:
Q  307 acatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaa 372  Q
    |||| |||||| |||||| || ||||||||||||||||| ||| |||||||||  |||||| ||||    
T  37003695 acatcattgattgatttatttgtattggtttgatacttttagtctcaataacacctatagagaaaa 37003760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 231 - 563
Target Start/End: Original strand, 22546 - 22887
Alignment:
Q  231 aataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagat----ttaat 326  Q
    ||||||||| ||||| ||| |||||| ||||||||||| | |||||||| ||| |||||||||| |||  |||||||||||||||||| ||    | | |    
T  22546 aataataaacattgaactatctcaaataagtttagttgccgaaaattagcatagataagaaagttaaacaattactacatgattgatatataaattcatt 22645  T
Q  327 tatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggac 426  Q
    | ||||||||||  |||| | |||||||||||||  ||||| ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |    
T  22646 tgtattggtttggaacttccggtttcaataacaacaatagagaaaactttttcaataataaaaattatcaagacaatagtcataaacatattaaatgggc 22745  T
Q  427 aatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatggataaaattggtttcttgaaat 521  Q
    | ||| ||| |||||||||||||||| |||||||||| |||| ||||||||||||||     ||| |  ||||||||| |||||||||  ||||||||||    
T  22746 attgaatttcttgcaaataacctatttgtttacattggaaaaaacattattaatctattttgtaaacaatcaattatgaataaaattgacttcttgaaat 22845  T
Q  522 acattttgtccaacttttct-aataactattgtcaatttttat 563  Q
     |||||||||||| |||||| ||||  ||||||||||||||||    
T  22846 -cattttgtccaaattttctaaatagttattgtcaatttttat 22887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 216 - 484
Target Start/End: Original strand, 23614462 - 23614728
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    |||||||||| ||||||||||||| |||||||||||||||| ||||||||||| | |||||||| |||||||| |||||||||| | ||||||| |||||    
T  23614462 tatccggctaccctaaataataaacattgagctacctcaaataagtttagttg-caaaaattagcataaataataaagtaaaaa-actactacaagattg 23614559  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaa 415  Q
    ||||||||| || ||||||||||||| |||| || ||||||||||  ||| | ||| |||||||||||| |||||||| |||||||||| || || ||||    
T  23614560 atagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattaacaagacaatagtcgtagacaa 23614659  T
Q  416 attaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||  |||||||||||| ||||||||||| ||||  |||||||| |||||  ||||||||||||||    
T  23614660 attaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctat 23614728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 246 - 462
Target Start/End: Complemental strand, 1600810 - 1600595
Alignment:
Q  246 gctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatacttt 345  Q
    |||||| |||| ||||||||||| | |||||||| |||||||| |||||||||| ||||||||| |||||||||||||| ||  ||||||||||| ||||    
T  1600810 gctaccccaaataagtttagttg-caaaaattagcataaataataaagtaaaaaaattactacaagattgatagatttatttgcattggtttgatgcttt 1600712  T
Q  346 cagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaata 445  Q
    | || ||||||||||  ||||| ||| | |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  1600711 cggtctcaataacaacaatagagaaacccttttcaacaataaaaattatcaagacaatagtcatagacaaattaaatggacaatgagtttcttgcaaata 1600612  T
Q  446 acctattagtttacatt 462  Q
    |||||||  ||||||||    
T  1600611 acctatttatttacatt 1600595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 200 - 484
Target Start/End: Complemental strand, 10406456 - 10406175
Alignment:
Q  200 ggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaa 299  Q
    |||||||||| || ||||||||||||  | ||||||||||||||||| |||||||||||| ||   ||||  |||||||| |||||||| ||||||||||    
T  10406456 ggtcggtatgtatttttatccggctactccaaataataaatattgagttacctcaaacaaattccattgta-aaaattagtataaataataaagtaaaaa 10406358  T
Q  300 tattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaaga 399  Q
     ||||||||| |||||||||||||| || |||| ||||||||||  |  | ||||||||||   |||| |||  |||||||||||||| |||||||||||    
T  10406357 aattactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaa--ctagagaaacttttttcaacaataataattatcaaga 10406260  T
Q  400 caatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||| ||||  ||||| |||||||||| ||||||| ||||||||||||||||  ||||||||  |||| |||||||||||||||    
T  10406259 caatagtcattgacaaactaaatggacagtgagtttcttgcaaataacctatttatttacattcgaaaaaacattattaatctat 10406175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 230 - 563
Target Start/End: Original strand, 47367704 - 47368043
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||| ||||||||||| ||||||  |  | ||||| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||| || |    
T  47367704 aaataataaacattgagctaccccaaacatatccaattgtcgaaaattagcatatataagaaagtaaaaa-attactacatgattgatagatttatttgt 47367802  T
Q  330 attggtttgatactttcagtttcaataacaattatagataaaactttttcaacaa-taaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    | ||||||| || |||||||  ||||||||| |||||| |||||||||| ||||| |||||||||||||| ||||| | ||||||| || ||| || |||    
T  47367803 aatggtttggtattttcagtcgcaataacaactatagagaaaacttttttaacaattaaaaattatcaaggcaatagttataaacatatcaaacgggcaa 47367902  T
Q  429 tgagtttattgcaaataacctattagtttacattgaaaaatacattat-----taatctataatcgctcaattatggataaaattggtttcttgaaatac 523  Q
    ||||||| |||||||||  ||| | |||||||||| | || |||||||     || | | ||| |  |||| ||||||||||||||  || |||||| ||    
T  47367903 tgagtttcttgcaaatagtctaattgtttacattggagaagacattatcattatattttgtaaacaatcaaatatggataaaattgcctttttgaaacac 47368002  T
Q  524 attttgtccaacttttct-aataactattgtcaatttttat 563  Q
    |||||||||||||||| | ||||  ||||||||||||||||    
T  47368003 attttgtccaacttttttaaatagatattgtcaatttttat 47368043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 200 - 484
Target Start/End: Original strand, 10177712 - 10177994
Alignment:
Q  200 ggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaa 299  Q
    |||||||||| || ||||||| ||||  | ||||||||||||||||||||||  ||| || ||  |||| | |||||||  |||||||| ||||||||||    
T  10177712 ggtcggtatgtatttttatccagctactccaaataataaatattgagctaccctaaataaattccgttg-caaaaattaacataaataataaagtaaaaa 10177810  T
Q  300 tattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaaga 399  Q
     ||||||||| |||||||||||||| || |||| ||||||||||  |  | ||||||||||  ||||| |||  ||||||||||||||||||||||||||    
T  10177811 -attactacaagattgatagatttatttgtatttgtttgatactcccgatctcaataacaacaatagagaaacttttttcaacaataaaaattatcaaga 10177909  T
Q  400 caatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||| ||||  ||||| |||||||||  ||||||| ||||||||||||||||  || |||||  |||| |||||||||||||||    
T  10177910 caatagtcattgacaaactaaatggacggtgagtttcttgcaaataacctatttattcacatttgaaaaaacattattaatctat 10177994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 187 - 484
Target Start/End: Original strand, 19313184 - 19313478
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||| ||  |||||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||  ||  |||| | || ||||  ||||||    
T  19313184 ttattcttgaagtggtcggtatgtatatttatccggctaccccaaataataaatattgagctaccccaaacacattccgttg-caaatattaacataaat 19313282  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaata 386  Q
    || |||||||||| ||||||||| ||||||| ||| |  || ||||  |||||||||  |  | ||||||||||  ||||| |||  |||||||||||||    
T  19313283 aataaagtaaaaaaattactacaagattgatggatat--ttgtatttctttgatactcccgatctcaataacaacaatagagaaacttttttcaacaata 19313380  T
Q  387 aaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||||||| |||||| ||||| ||||||||||| || | ||||||| ||||||||||| ||||  ||||||||  |||| |||||||||||||||    
T  19313381 aaaattatcaaaacaatagtcatagacaaattaaatagatagtgagtttcttgcaaataacttatttatttacatttgaaaagacattattaatctat 19313478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 281 - 543
Target Start/End: Original strand, 11142565 - 11142832
Alignment:
Q  281 ataaataagaaagtaaaaatatta-ctacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttc 379  Q
    |||||||| |||||||||| |||| | |||  | ||||||||||| || |||||||||||||||  |  | | ||||||||  ||||| ||  |||||||    
T  11142565 ataaataataaagtaaaaaaattaaccacaaaactgatagatttatttgtattggtttgatactcccgatctaaataacaacaatagagaagcctttttc 11142664  T
Q  380 aacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaa 479  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||| |||||||||||  ||||||||  |||| ||||||||||    
T  11142665 aacaataaaaattatcaagacaatatttatagacaaattaaatggacaatgagtttcttgcgaataacctattcatttacatttgaaaagacattattaa 11142764  T
Q  480 tcta----taatcgctcaattatggataaaattggtttcttgaaatacattttgtccaacttttctaa 543  Q
    ||||    ||| |   ||||||| ||||||||||| ||||||||| |||||||  ||||| |||||||    
T  11142765 tctattattaaacagacaattattgataaaattgggttcttgaaacacattttacccaacgtttctaa 11142832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 30950906 - 30950734
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||     ||| || ||||||||||    
T  30950906 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattgaaaaagacattattaatctatttagtaaacggtcaattatgg 30950807  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||||||||||||||| ||||||   |||||||| | |||| ||||||||||||||||| || |||||    
T  30950806 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttgttg 30950734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 316 - 484
Target Start/End: Original strand, 44961379 - 44961547
Alignment:
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaa 415  Q
    ||||||||| ||  |||| |||||| ||||| || ||||||||||  ||||| ||| | ||||||||| |||||||||||||||||||| ||||| ||||    
T  44961379 atagatttatttgcattgatttgatgctttcggtctcaataacaacaatagagaaacccttttcaacagtaaaaattatcaagacaatagtcatagacaa 44961478  T
Q  416 attaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    |||||||||||||||||||| ||||||||||||||||  ||||||||  |||| |||| ||||||||||    
T  44961479 attaaatggacaatgagtttcttgcaaataacctatttatttacatttgaaaagacatcattaatctat 44961547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 272 - 410
Target Start/End: Complemental strand, 33241509 - 33241370
Alignment:
Q  272 aaaattaggataaata--agaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagata 369  Q
    ||||||||||||||||  |||| |||||||||||||||||| | | ||||||||| |||||||| ||||||||||| ||| |||| |||||||||||| |    
T  33241509 aaaattaggataaatataagaatgtaaaaatattactacataactaatagatttatttatattgatttgatacttttagtctcaacaacaattatagaga 33241410  T
Q  370 aaactttttcaacaataaaaattatcaagacaatattcata 410  Q
    |||| |||||||||||||||||||||||||||||| |||||    
T  33241409 aaac-ttttcaacaataaaaattatcaagacaatagtcata 33241370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 15757680 - 15757813
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  15757680 tattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 15757779  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  15757780 tgagtttcttgcaaataacctatttatttacatt 15757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 418 - 559
Target Start/End: Complemental strand, 33240946 - 33240800
Alignment:
Q  418 taaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatggataaaattggtt 512  Q
    |||||||||| ||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||     ||| | |||||||||||||||||||||||    
T  33240946 taaatggacattgaatttattgaaaatgacctattagtttacattggaaaatacattattaatctatttattaaacactcaattatggataaaattggtt 33240847  T
Q  513 tcttgaaatacattttgtccaacttttctaataactattgtcaattt 559  Q
    | || |||| ||||||||| || |||||||||| | |||||||||||    
T  33240846 ttttaaaatgcattttgtctaaattttctaatagccattgtcaattt 33240800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 10620067 - 10620200
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  10620067 tattggtttgatacttcccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 10620166  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||| ||||||||||||  ||||||||    
T  10620167 tgagtttcttgaaaataacctatttatttacatt 10620200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 29357177 - 29357284
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| |||| ||||||||||| | |||||||  |||||||||||||| |||| | |||||||| ||||||||||||| || |    
T  29357177 aaataataaatattgagctaccccaaataagtttagttgccgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagatttatttgt 29357275  T
Q  330 attggtttg 338  Q
    |||||||||    
T  29357276 attggtttg 29357284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 306 - 422
Target Start/End: Complemental strand, 52111177 - 52111063
Alignment:
Q  306 tacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatat 405  Q
    ||||| ||||||| ||||| || ||||||||||||||||||  | |||||||||| || |||  ||||| ||||||||||||||||||||| || ||||     
T  52111177 tacataattgataaatttatttgtattggtttgatactttcgatctcaataacaactagaga--aaactatttcaacaataaaaattatcatgaaaataa 52111080  T
Q  406 tcataaacaaattaaat 422  Q
    |||||||||||||||||    
T  52111079 tcataaacaaattaaat 52111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 338
Target Start/End: Complemental strand, 27696752 - 27696645
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    ||||||||||||||||||||||| ||| || ||| |||| | || ||||  |||||||||||||| |||| | |||||||| ||||||||||||| || |    
T  27696752 aaataataaatattgagctaccttaaataaatttggttgccgaatattaacataaataagaaagtgaaaa-aatactacatcattgatagatttatttgt 27696654  T
Q  330 attggtttg 338  Q
    |||||||||    
T  27696653 attggtttg 27696645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 407 - 481
Target Start/End: Complemental strand, 29799150 - 29799076
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatc 481  Q
    ||||||||||||||||||| | ||||||| || ||||||||||||| ||||||||||  ||| ||||||||||||    
T  29799150 cataaacaaattaaatggatattgagtttcttacaaataacctatttgtttacattgggaaagacattattaatc 29799076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 424 - 484
Target Start/End: Original strand, 28403123 - 28403183
Alignment:
Q  424 gacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||||||||  ||||||||||||||| ||||||||||||||| |||||||| ||||||    
T  28403123 gacaatgagtttcatgcaaataacctatttgtttacattgaaaaagacattattgatctat 28403183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 230 - 387
Target Start/End: Complemental strand, 5184946 - 5184789
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    ||||||||||||||||| ||||  ||| |||||  ||||||||||||||| ||||||| ||||  | ||| ||| |||||||||| || |||||| | |     
T  5184946 aaataataaatattgagttaccctaaataagttcggttgtctaaaattagcataaatacgaaa-aagaaaaattgctacatgattcattgatttattcac 5184848  T
Q  330 attggtttgatactttcagtttcaataacaattatagata-aaactttttcaacaataa 387  Q
      || ||||||||||||| | |||||||||| ||||| || ||| | ||||||||||||    
T  5184847 gctgatttgatactttcaatctcaataacaactataggtagaaaatatttcaacaataa 5184789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 238 - 435
Target Start/End: Complemental strand, 33323189 - 33322990
Alignment:
Q  238 aatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattacta---catgattgatagatttaattatattgg 334  Q
    |||||| |||||||| ||| ||||||| ||| | ||||  || |||||||||||| |||||| |||| ||    |||||||| | ||||| || |||| |    
T  33323189 aatatttagctaccttaaataagtttatttgacgaaaacaagcataaataagaaactaaaaaaattattatatgatgattgacaaatttatttgtattag 33323090  T
Q  335 tttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtt 434  Q
    ||| | | ||||||| |||| || || |||||| |||||||||| || |||||||||| |||| |||||| |   ||| |||||||||||| ||||||||    
T  33323089 ttttacattttcagtctcaacaataaatatagagaaaacttttt-aagaataaaaattgtcaaaacaatagtttgaaataaattaaatggataatgagtt 33322991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 476
Target Start/End: Original strand, 8262056 - 8262176
Alignment:
Q  356 aacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagt 455  Q
    ||||| |||||| || ||||||| || |||||||||| | |  |||||| | | ||||||||||||  || ||||| ||| ||| ||||||| |||| |     
T  8262056 aacaaatatagagaagacttttttaagaataaaaattgttagaacaatagttagaaacaaattaaacagataatgaatttcttgtaaataacttatttgc 8262155  T
Q  456 ttacattgaaaaatacattat 476  Q
    ||||||||||||||| |||||    
T  8262156 ttacattgaaaaatatattat 8262176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 366
Target Start/End: Original strand, 46515441 - 46515585
Alignment:
Q  222 gctatcctaaataataaatattgagctacctcaaacaagtttag-ttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgataga 320  Q
    |||| |||||| |||||||||||||||||| |||| || ||| | ||||| |||||||| |||||||||     ||||| ||| |||||||||||| ||     
T  46515441 gctaccctaaaaaataaatattgagctaccccaaataaatttggtttgtcgaaaattagcataaataag-----aaaaaaattgctacatgattgacagg 46515535  T
Q  321 tttaattata----ttggtttgatactttcagtttcaataacaattatag 366  Q
    | || |||||    || | |||||||||||||| |||||||||| |||||    
T  46515536 tatatttatacgggtttgattgatactttcagtctcaataacaactatag 46515585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 560
Target Start/End: Original strand, 46515604 - 46515767
Alignment:
Q  399 acaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctca 493  Q
    |||||| | |||||||||||||| ||||||| ||||| ||| ||||||| | || ||||||||||||||  |||||| |||||||     ||| |  |||    
T  46515604 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa--acattaataatctatttattaaacagtca 46515700  T
Q  494 attatggataaaattggtttcttgaaatacattttgtccaacttttctaataactattgtcaatttt 560  Q
    || |||||||||||||  ||||| |||||| ||||| |||| |||| |||  | | |||||||||||    
T  46515701 atcatggataaaattgagttcttaaaatacgttttgcccaaattttttaaatatttttgtcaatttt 46515767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 404
Target Start/End: Complemental strand, 10989502 - 10989326
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatg--attgatagatttaatt 327  Q
    |||||| ||||||| ||||||| ||||||| |||| ||||  |||||||  |||||||||||| | || | ||||||||  |  ||||||||||||| ||    
T  10989502 aaataaaaaatatttagctaccccaaacaaatttatttgttaaaaattaacataaataagaaatttaagaaattactacgggatattgatagatttattt 10989403  T
Q  328 atattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaata 404  Q
     |||| |||  | ||||||  | |||||||||| | |  | |||||||||  || |||||||||| |||| ||||||    
T  10989402 gtattagttcaacactttcgatctcaataacaaatttgaagaaaacttttggaagaataaaaattgtcaaaacaata 10989326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 44960960 - 44961001
Alignment:
Q  283 aaataagaaagtaaaaatattactacatgattgatagattta 324  Q
    |||||| |||||||||| ||||||||| ||||||||||||||    
T  44960960 aaataataaagtaaaaaaattactacaagattgatagattta 44961001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 491 - 559
Target Start/End: Complemental strand, 52111005 - 52110936
Alignment:
Q  491 tcaattatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaattt 559  Q
    ||||||||| |||||||||| ||||| |||   |||||||||||||||| | |||||||||||| |||||    
T  52111005 tcaattatgaataaaattggcttcttaaaacgtattttgtccaacttttttaaataactattgttaattt 52110936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 216 - 484
Target Start/End: Original strand, 16152123 - 16152389
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    |||||||||| || |||||||||| ||||||||||| |||| ||||||||||| | |||||||| |||||||| |||||||||| | ||||||| |||||    
T  16152123 tatccggctaccccaaataataaacattgagctaccccaaataagtttagttg-caaaaattagcataaataataaagtaaaaa-actactacaagattg 16152220  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaa 415  Q
    ||||||||| || ||||||||||||| |||| || ||||||||||  ||| | ||| |||||||||||| ||||||||||||||||||| || || ||||    
T  16152221 atagatttatttgtattggtttgatattttcggtctcaataacaacaataaagaaacctttttcaacaacaaaaattatcaagacaatagtcgtagacaa 16152320  T
Q  416 attaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||  |||||||||||| ||||||||||| ||||  |||||||| |||||  ||||||||||||||    
T  16152321 attaaacagacaatgagtttcttgcaaataacatatttatttacatttaaaaagtcattattaatctat 16152389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 227 - 411
Target Start/End: Complemental strand, 11906841 - 11906662
Alignment:
Q  227 cctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaat 326  Q
    ||||||||||||| |||||||||||||||||||||||||||| | |||| ||  ||||||||||||||| ||| |||| |||   ||||||||||||| |    
T  11906841 cctaaataataaacattgagctacctcaaacaagtttagttg-ccaaaaataacataaataagaaagtagaaaaattattac---attgatagatttatt 11906746  T
Q  327 tatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
    | |||||||||| ||||| |  | ||||||||||||||||| | ||| |||||||||||||||| ||||||||||||| ||||||    
T  11906745 tgtattggtttggtacttccgctctcaataacaattatagagagaac-ttttcaacaataaaaactatcaagacaatagtcataa 11906662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 282 - 443
Target Start/End: Complemental strand, 11028072 - 11027911
Alignment:
Q  282 taaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaa 381  Q
    ||||||| |||||||||| |||| |||| |||||||||||||| || |||||||||||||||| |||| ||||||||||  ||| | ||| |||||||||    
T  11028072 taaataataaagtaaaaaaattattacaagattgatagatttatttgtattggtttgatacttccagtctcaataacaacaataaagaaacctttttcaa 11027973  T
Q  382 caataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaa 443  Q
     || ||||||| ||||||||||| ||||  |||||||||||| ||||||||||| |||||||    
T  11027972 aaacaaaaattctcaagacaatagtcatggacaaattaaatgtacaatgagtttcttgcaaa 11027911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 46823808 - 46823941
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||||| || ||||||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  46823808 tattggtttgatactttccgtctcaataacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 46823907  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  46823908 tgagtttcttgcaaataacctatttatttacatt 46823941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 407 - 572
Target Start/End: Original strand, 40763813 - 40763985
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  40763813 cataaacaaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaaaacattattaatctatttagtaaacggtcaattatgg 40763912  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||||||||||||||| ||||||   |||||||| | |||| ||||||||||||||||| || |||||    
T  40763913 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttgttg 40763985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 329 - 484
Target Start/End: Complemental strand, 17653129 - 17652974
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| |  | ||||||||||  ||| |  |||||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  17653129 tattggtttgatacttcccatctcaataacaacaataaagtaaactttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 17653030  T
Q  429 tgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||| ||||||||||||||||  || |||||  |||| |||||||||||||||    
T  17653029 tgagtttcttgcaaataacctatttattaacatttgaaaagacattattaatctat 17652974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 329 - 462
Target Start/End: Original strand, 21295936 - 21296069
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||| ||||||  ||| | ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||    
T  21295936 tattggtttgatacttcccgtctcagtaacaacaataaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaa 21296035  T
Q  429 tgagtttattgcaaataacctattagtttacatt 462  Q
    ||||||| ||||||||||||||||  ||||||||    
T  21296036 tgagtttcttgcaaataacctatttatttacatt 21296069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 377 - 572
Target Start/End: Original strand, 29648391 - 29648593
Alignment:
Q  377 ttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattat 476  Q
    |||||| ||| ||||||||||||||||| |||||| ||||||||| |||||||  ||||||||||||| |  | || ||||| ||||||||| | |||||    
T  29648391 ttcaacgatataaattatcaagacaatagtcataatcaaattaaacggacaataggtttattgcaaatgatttctttgtttatattgaaaaagagattat 29648490  T
Q  477 taatctat-----aatcgctcaat--tatggataaaattggtttcttgaaatacattttgtccaacttttctaataactattgtcaatttttattctctg 569  Q
    |||| |||     || |  |||||  ||||||||||||||  ||||| |||| |||||||  ||||||||||||||||||||||||||||||||||| ||    
T  29648491 taatttatttagtaaacaatcaatattatggataaaattgacttcttaaaatccattttgctcaacttttctaataactattgtcaatttttattctttg 29648590  T
Q  570 ttg 572  Q
    |||    
T  29648591 ttg 29648593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 216 - 411
Target Start/End: Complemental strand, 52403532 - 52403345
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    ||||| |||| ||||||||||||| |||||| ||||  ||| ||||| ||||||| ||||       ||||||||||||||||| |||| ||||| ||||    
T  52403532 tatccagctaccctaaataataaacattgagataccctaaataagttcagttgtcaaaaaa------aaataagaaagtaaaaa-attattacatcattg 52403440  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
    ||||||||| || |||||||||| | ||| || | ||||||||||||||| | | |||||||||||||||||||| ||||||||||||| ||||||    
T  52403439 atagatttatttgtattggtttggttcttccactctcaataacaattata-agagaactttttcaacaataaaaactatcaagacaatagtcataa 52403345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 20843284 - 20843113
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatgga 501  Q
    ||||||||| ||||||||||| ||| ||| |||||||||||||||| |||||||||| |||| ||||||||||||||     |||  | || ||||||||    
T  20843284 cataaacaatttaaatggacattgaatttcttgcaaataacctatttgtttacattggaaaagacattattaatctatttagtaaatggtctattatgga 20843185  T
Q  502 taaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||| |||||||||| ||||||  ||||||||| | |||| ||||||| |||| |||| || |||||    
T  20843184 taaaattggcttcttgaaatgcattttacccaacttttttaaatagctattgttaattcttatcctttgttg 20843113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 19795485 - 19795592
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||||  |||||||||||||| |||| | ||| |||| ||||||||||||| || |    
T  19795485 aaataataaatattgagctaccccaaacaagtttggttgtcgaaaattaacataaataagaaagtgaaaa-agtaccacatcattgatagatttatttgt 19795583  T
Q  330 attggtttg 338  Q
    |||||||||    
T  19795584 attggtttg 19795592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 230 - 360
Target Start/End: Original strand, 37175345 - 37175475
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||| || ||| |||||||| |||  ||||  |||||||| ||||||||||||||||||| ||||||| ||||| ||  |||||| || |    
T  37175345 aaataataaatatttagatacttcaaacaattttgtttgttgaaaattagcataaataagaaagtaaaaaaattactatatgatggactgatttatttgt 37175444  T
Q  330 attggtttgatactttcagtttcaataacaa 360  Q
    ||| |||||||| ||||| | ||||||||||    
T  37175445 attagtttgatattttcaatctcaataacaa 37175475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 407 - 521
Target Start/End: Complemental strand, 3458173 - 3458054
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatgga 501  Q
    ||||||||||||||||||| | ||||||| ||||||||||| |||| ||||||| || | || ||||||||||| ||     ||| || |||||||| ||    
T  3458173 cataaacaaattaaatggatattgagtttcttgcaaataacttatttgtttacactggagaagacattattaatttatctagtaaacggtcaattataga 3458074  T
Q  502 taaaattggtttcttgaaat 521  Q
    ||||||||||||||||||||    
T  3458073 taaaattggtttcttgaaat 3458054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 35061893 - 35061995
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||||||||||||||   ||| |||||| |||||| |||||||  |||||||||||||| |||| | |||||||| ||||||||||||| || |    
T  35061893 aaataataaatattgagctactctaaataagtttggttgtcgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagatttatttgt 35061991  T
Q  330 attg 333  Q
    ||||    
T  35061992 attg 35061995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 230 - 323
Target Start/End: Original strand, 40785344 - 40785437
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagattt 323  Q
    ||||||||||||||||||||||||||| || ||| |||| | |||||| | ||| |||||||||| || | |||||||||| | ||||||||||    
T  40785344 aaataataaatattgagctacctcaaataaatttggttgccgaaaatttgcatagataagaaagtgaacaaattactacatcaatgatagattt 40785437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 296 - 372
Target Start/End: Original strand, 29123484 - 29123560
Alignment:
Q  296 aaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaa 372  Q
    |||| |||||||||| ||||||||||| | || ||||||||||||||||| ||| |||||||||| |||||| ||||    
T  29123484 aaaaaattactacatcattgatagattaatttgtattggtttgatacttttagtctcaataacaactatagagaaaa 29123560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 495 - 564
Target Start/End: Complemental strand, 52403281 - 52403211
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttatt 564  Q
    |||||||||||||||| ||||||||| ||||||| |||||||||| | |||| |||| |||||||||||||    
T  52403281 ttatggataaaattgggttcttgaaacacattttatccaacttttttaaatagctatcgtcaatttttatt 52403211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 54025806 - 54025900
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagattta 324  Q
    |||||| ||||||| |||||||  |||||| |||| ||||  |||||||| |||||||||||| |||| | ||||||| ||||| |||| |||||    
T  54025806 aaataaaaaatatttagctaccctaaacaaatttatttgttaaaaattagcataaataagaaaataaagaaattactaaatgatggataaattta 54025900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 411
Target Start/End: Original strand, 38171407 - 38171466
Alignment:
Q  351 tcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
    |||| ||||||||| || ||||||||| |||||| ||||||||||||||||||| ||||||    
T  38171407 tcaacaacaattattgagaaaactttt-caacaaaaaaaattatcaagacaatagtcataa 38171466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 281 - 563
Target Start/End: Original strand, 29486351 - 29486636
Alignment:
Q  281 ataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttca 380  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||   || ||||||| | ||||||| ||||| ||||||    
T  29486351 ataaataagaaagtaaaaatattaatacatgattgatagatttatttatattgg-ttgatacttctggtctcaataatagttatagagaaaac-ttttca 29486448  T
Q  381 acaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaat 480  Q
    | | |||||||||| ||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||   ||||||||||||||| |||| ||||    
T  29486449 agagtaaaaattattaagacaatagtcataaacaaattaattggacaat-agtttcttgcaaataacctattttcttacattgaaaaatatattaataat 29486547  T
Q  481 cta-----taatcgctcaattatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttat 563  Q
    |||     ||| || ||||||||||||||| |||  ||||||||||  ||||    |||||||||| ||||||||||||||||||||||    
T  29486548 ctatttagtaaacggtcaattatggataaatttgacttcttgaaatgtatttgccacaacttttctaaataactattgtcaatttttat 29486636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 211 - 411
Target Start/End: Complemental strand, 31216555 - 31216353
Alignment:
Q  211 atatttatccggctatcctaaataataaatattgagctacctcaaacaagttt-agttgtctaaaattaggataaataagaaagtaaaaatattactaca 309  Q
    |||| |||||| ||| ||||||||| |||||||||| |||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||| ||||    
T  31216555 atatatatccgactaccctaaataaaaaatattgagatacctcaaacaagttttagttgtcgaaaattagtataaataagaaagtaaaaaaattattaca 31216456  T
Q  310 tgattgatagatttaattatattgg-tttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattca 408  Q
    ||||||||||||||| || |||||| |||||||||| | |||| ||||| ||||||||| ||||||||||| ||| |||||| ||||||||||||| |||    
T  31216455 tgattgatagatttatttgtattggttttgatacttccggttttaataataattatagagaaaactttttccacactaaaaactatcaagacaatagtca 31216356  T
Q  409 taa 411  Q
    |||    
T  31216355 taa 31216353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 216 - 484
Target Start/End: Original strand, 24428630 - 24428900
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    ||||||| || ||||||||||||| |||||  ||||  |||||| || ||||| | |||||||| |||||| ||||||||||| ||||||||||||||||    
T  24428630 tatccggttaccctaaataataaacattgaattaccctaaacaaattcagttgccgaaaattagtataaattagaaagtaaaattattactacatgattg 24428729  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaaca- 414  Q
    ||| ||||| ||||||||||||||| |||    | | ||| ||| || |||| ||||||||||  ||| |||||||||| ||||||||| |||||||||     
T  24428730 ataaatttatttatattggtttgatccttcggatcttaatcaca-ttgtagagaaaactttttgtacagtaaaaattattaagacaatagtcataaacaa 24428828  T
Q  415 --aattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
      ||||||||||||| ||||||| ||| |||||||||||| ||| ||||||||||| |||||||||||||||    
T  24428829 caaattaaatggacattgagtttcttgaaaataacctatttgttaacattgaaaaagacattattaatctat 24428900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 216 - 411
Target Start/End: Complemental strand, 22956705 - 22956511
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    ||||| |||| || |||||||||| ||||||||||| |||||||||||||||| | ||||| |  ||||||||||||||| ||| |||| ||||| ||||    
T  22956705 tatccagctaccccaaataataaaaattgagctaccccaaacaagtttagttgccaaaaataac-ataaataagaaagtagaaaaattattacatcattg 22956607  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
    ||||||||| || |||||||||| ||||| |  | ||||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||    
T  22956606 atagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatagtcataa 22956511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 216 - 411
Target Start/End: Original strand, 23831687 - 23831881
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    ||||| |||| || |||||||||| ||||||||||| |||||||||||||||| | ||||| |  ||||||||||||||| ||| |||| ||||| ||||    
T  23831687 tatccagctaccccaaataataaaaattgagctaccccaaacaagtttagttgccaaaaataac-ataaataagaaagtagaaaaattattacatcattg 23831785  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataa 411  Q
    ||||||||| || |||||||||| ||||| |  | ||||||||||||||||| | |||||||||||||||||||| ||||||||||||| ||||||    
T  23831786 atagatttatttgtattggtttggtacttccgctctcaataacaattatagagagaactttttcaacaataaaaactatcaagacaatagtcataa 23831881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 331 - 484
Target Start/End: Complemental strand, 29363685 - 29363532
Alignment:
Q  331 ttggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatg 430  Q
    |||||||||||||||| || ||||||||||  | | | ||| ||||||||||||||||||| |||||||||||| ||||| |||||||||||| ||||||    
T  29363685 ttggtttgatactttccgtctcaataacaacgacaaagaaacctttttcaacaataaaaatgatcaagacaatagtcatagacaaattaaatgtacaatg 29363586  T
Q  431 agtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||| ||||||||||||||||  ||||||||  |||| |||||||||||||||    
T  29363585 agtttcttgcaaataacctatttatttacatttgaaaagacattattaatctat 29363532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 329 - 484
Target Start/End: Original strand, 34729779 - 34729934
Alignment:
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaa 428  Q
    |||||||||||||||| | || ||||||||||  |||   ||||||||||||||||||||||| |||| ||||||| ||||| |||| ||||||| ||||    
T  34729779 tattggtttgatacttcccgtctcaataacaacaataacgaaaactttttcaacaataaaaatgatcatgacaatagtcatagacaagttaaatgtacaa 34729878  T
Q  429 tgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||| ||||||||||||||||  || ||||| ||||| |||||||||||||||    
T  34729879 tgagtttcttgcaaataacctatttattaacatttaaaaagacattattaatctat 34729934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 1780740 - 1780568
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||||||||||||||| ||||||| |||||||||||| ||| | ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  1780740 cataaacaaattaaatggacattgagtttcttgcaaataaccaatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 1780641  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||||||||||||||| ||||||   |||||||| | |||| |||| |||||||||||| || |||||    
T  1780640 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctatcgtcaatttttatcctttgttg 1780568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 272 - 385
Target Start/End: Original strand, 27673933 - 27674046
Alignment:
Q  272 aaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaa 371  Q
    |||||||| |||||||| |||||||||| |||||||||  ||||||| ||||| || |||||||||||||||||| || ||||||||||| ||||| |||    
T  27673933 aaaattagcataaataataaagtaaaaaaattactacaaaattgatatatttatttgtattggtttgatactttcggtctcaataacaataatagagaaa 27674032  T
Q  372 actttttcaacaat 385  Q
     |||||||||||||    
T  27674033 cctttttcaacaat 27674046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 230 - 338
Target Start/End: Original strand, 33224595 - 33224702
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    ||||||||||||||||||||||  |||||||||| |||||| |||||||  |||||||||||||| |||| | ||| |||| ||||||||||||| || |    
T  33224595 aaataataaatattgagctaccctaaacaagtttggttgtcgaaaattaacataaataagaaagtgaaaa-agtaccacatcattgatagatttatttgt 33224693  T
Q  330 attggtttg 338  Q
    |||||||||    
T  33224694 attggtttg 33224702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 8560148 - 8560055
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagattta 324  Q
    |||||||||||||||||||||| |||| |||||| |||| | |||||||  |||||||||||||| |||| | |||||||| |||||||||||||    
T  8560148 aaataataaatattgagctaccccaaataagtttggttgccgaaaattaacataaataagaaagtgaaaa-agtactacatcattgatagattta 8560055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 564
Target Start/End: Complemental strand, 22956447 - 22956377
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttatt 564  Q
    |||||||||||||||| ||||||||| ||||||| || ||||||| | |||| |||| |||||||||||||    
T  22956447 ttatggataaaattgggttcttgaaacacattttatcaaacttttttaaatagctatcgtcaatttttatt 22956377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 495 - 564
Target Start/End: Original strand, 23831945 - 23832015
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttatt 564  Q
    |||||||||||||||| ||||||||| ||||||| || ||||||| | |||| |||| |||||||||||||    
T  23831945 ttatggataaaattgggttcttgaaacacattttatcaaacttttttaaatagctatcgtcaatttttatt 23832015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 495 - 536
Target Start/End: Complemental strand, 31216292 - 31216251
Alignment:
Q  495 ttatggataaaattggtttcttgaaatacattttgtccaact 536  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  31216292 ttatggataaaattggcttcttgaaacacattttgtccaact 31216251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 529
Target Start/End: Complemental strand, 904124 - 903992
Alignment:
Q  399 acaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctca 493  Q
    |||||| | |||||||||||||| ||||||| ||||| ||| ||||||| | || ||||||||||||||  |||||| |||| ||     ||| || |||    
T  904124 acaatagttataaacaaattaaaaggacaataagttt-ttgaaaataacttgtttgtttacattgaaaa--acattaataatttatttattaaacggtca 904028  T
Q  494 attatggataaaattggtttcttgaaatacattttg 529  Q
    |||||||||||||||   ||||| ||||||||||||    
T  904027 attatggataaaatttacttcttaaaatacattttg 903992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 187 - 543
Target Start/End: Original strand, 4435055 - 4435414
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||| ||| |||||||||| || | ||||||| || | ||||||||||| ||||| |||||  ||| ||||| | ||| | ||| |||  ||||||    
T  4435055 ttattcttgaattggtcggtatgtatttatatccggttaccttaaataataaacattgaactaccctaaataagttcaattg-caaaagttatcataaat 4435153  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaata 386  Q
    || |||||||||  || ||| ||||||||||||||||| || |||| ||||||||||| | || ||||||||||||||||| ||| |||||| |||||||    
T  4435154 aataaagtaaaacaatcactgcatgattgatagatttatttgtatttgtttgatacttccggtctcaataacaattatagagaaaccttttttaacaata 4435253  T
Q  387 aaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta--- 483  Q
    ||||||||| |||||||| ||||| | || || |||||||||||||||| ||| ||||||||||||  ||||||||  |||| ||||||||||||||       
T  4435254 aaaattatctagacaatagtcatagataattttaatggacaatgagtttcttgtaaataacctatttatttacatttgaaaagacattattaatctatta 4435353  T
Q  484 -taatcgctcaattatggataaaattggtttcttgaaatacattttgtccaacttttctaa 543  Q
     ||| |   ||||||||||| ||||||  |||||||||| ||||||| ||||| |||||||    
T  4435354 ttaaacagacaattatggatgaaattgagttcttgaaatgcattttgcccaacgtttctaa 4435414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 385 - 563
Target Start/End: Complemental strand, 42799275 - 42799090
Alignment:
Q  385 taaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    |||||||| | ||||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||| |||||||||| |||| |||||||||||||||    
T  42799275 taaaaattttaaagacaatagtcataaacaaattaaatggacattgagtttcttgcaaataaactatttgtttacattggaaaagacattattaatctat 42799176  T
Q  485 ------aatcgctcaattatggataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttat 563  Q
          ||  | |||||||||||||||||||| |||||||||| |||||| |||||||||| | |||| |||||||||||||||||    
T  42799175 ttagtaaaatgatcaattatggataaaattggcttcttgaaatgcattttatccaacttttttaaatagctattgtcaatttttat 42799090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 407 - 572
Target Start/End: Original strand, 16546354 - 16546526
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||| | ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  16546354 cataaacaaattaaatggacattgagtttcttccaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 16546453  T
Q  501 ataaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||||||||||||||| ||||||   |||||||| | |||| ||||||||||||||||| || |||||    
T  16546454 ataaaattggtttcttgaaatgcattttacacaacttttttaaatagctattgtcaatttttatcctttgttg 16546526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 407 - 528
Target Start/End: Complemental strand, 39070292 - 39070165
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattag-tttacattgaaaaatacattattaatcta-----taatcgctcaattatgg 500  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||| | ||||||||| |||| ||||||||||||||     ||| || ||||||||||    
T  39070292 cataaataaattaaatggacattgagtttcttgcaaataacctatttgttttacattggaaaagacattattaatctatttagtaaacggtcaattatgg 39070193  T
Q  501 ataaaattggtttcttgaaatacatttt 528  Q
    ||||||||||||||||||||| ||||||    
T  39070192 ataaaattggtttcttgaaatgcatttt 39070165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 230 - 423
Target Start/End: Original strand, 26180506 - 26180690
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgt-ctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaatta 328  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||| ||| | || |||||| ||| ||||||| |||||||||||||||| ||     
T  26180506 aaataataaatattgagctacctcaaacaagtttagttgtccaaaaattagcatataaaaaaaagtacaaa-attacta-atgattgatagatttatttg 26180603  T
Q  329 tattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatg 423  Q
    || || |||| || || ||||        ||| |||||| |||||||||| |||||| |||| ||||||||||||| ||||||||| ||||||||    
T  26180604 taatgatttggtatttccagt--------caactatagagaaaacttttttaacaattaaaactatcaagacaatagtcataaacatattaaatg 26180690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 407 - 572
Target Start/End: Complemental strand, 45656043 - 45655872
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta-----taatcgctcaattatgga 501  Q
    ||||||||| | ||||||||| ||| ||| |||||||||||||||| ||||||||||||||| ||||||||||||||     ||| || ||||||||| |    
T  45656043 cataaacaattgaaatggacattgaatttcttgcaaataacctatttgtttacattgaaaaagacattattaatctatttagtaaacggtcaattatgaa 45655944  T
Q  502 taaaattggtttcttgaaatacattttgtccaacttttct-aataactattgtcaatttttattctctgttg 572  Q
    ||||||||| || ||||||| ||||||  ||||||||| | |||| ||||||| |||| |||| || |||||    
T  45655943 taaaattggctttttgaaatgcattttacccaacttttttaaatagctattgttaattcttatcctttgttg 45655872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 289 - 393
Target Start/End: Complemental strand, 18160032 - 18159928
Alignment:
Q  289 gaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaa 388  Q
    ||||| ||||| |||||||||||||||||||||||| || ||||  |||||||| ||| |  |||||||||| |||||| ||||||||| || |||||||    
T  18160032 gaaagaaaaaaaattactacatgattgatagatttatttgtattcatttgataccttcggcctcaataacaaatatagagaaaacttttacagcaataaa 18159933  T
Q  389 aatta 393  Q
    |||||    
T  18159932 aatta 18159928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 393
Target Start/End: Original strand, 18308087 - 18308191
Alignment:
Q  289 gaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaa 388  Q
    ||||| ||||| || ||| ||||||||||||||||| || |||| ||||||||| |||    |||||||||| |||||| ||||||||| ||||||||||    
T  18308087 gaaagaaaaaagatcactgcatgattgatagatttatttgtattcgtttgatacattcgacctcaataacaaatatagagaaaacttttacaacaataaa 18308186  T
Q  389 aatta 393  Q
    |||||    
T  18308187 aatta 18308191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 281 - 484
Target Start/End: Complemental strand, 21746371 - 21746168
Alignment:
Q  281 ataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttca 380  Q
    |||||||||||| |||||| |||| |||||||||| || ||||| || ||||  ||| | |||||  || |||| ||||| || ||| ||||| |||| |    
T  21746371 ataaataagaaaataaaaaaattattacatgattggtaaatttatttgtattaatttaacacttttggtatcaacaacaaatacagagaaaacgttttta 21746272  T
Q  381 acaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaat 480  Q
    | |||||||||| | || |||||| ||||||||||||||||  |  | | |||||  ||||| |||| ||||  |||||||||||||  ||||||||| |    
T  21746271 agaataaaaattgttaaaacaatagtcataaacaaattaaacaggtagtaagtttcatgcaagtaacttatttatttacattgaaaatgacattattagt 21746172  T
Q  481 ctat 484  Q
    ||||    
T  21746171 ctat 21746168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 18161200 - 18161103
Alignment:
Q  295 aaaaatattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaatta 393  Q
    ||||| ||||||||||||||||||||||||  | |||| ||||||||| ||| |  |||||||||| ||||||  |||||||| |||||||||||||||    
T  18161200 aaaaagattactacatgattgatagatttatctgtattcgtttgataccttcggcctcaataacaaatataga-gaaacttttacaacaataaaaatta 18161103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 344
Target Start/End: Original strand, 38881161 - 38881282
Alignment:
Q  223 ctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatt 322  Q
    ||||| ||||||||||||||||| ||| | |||| || |||| ||||  |||||||| |||||||| |||||||||| || |||| | |||||||| |||    
T  38881161 ctatcttaaataataaatattgaactatcacaaataaatttaattgt-aaaaattagcataaataataaagtaaaaaaatcactataagattgataaatt 38881259  T
Q  323 taattata-ttggtttgatactt 344  Q
    || ||||| ||||||||||||||    
T  38881260 tatttatatttggtttgatactt 38881282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 376 - 435
Target Start/End: Original strand, 38881702 - 38881761
Alignment:
Q  376 tttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaatgagttt 435  Q
    |||||||||||||||||||||||| |||| ||||| | |||||||||| |||||||||||    
T  38881702 tttcaacaataaaaattatcaagataatagtcatagataaattaaatgtacaatgagttt 38881761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 407 - 484
Target Start/End: Original strand, 37614591 - 37614671
Alignment:
Q  407 cataaacaaattaaatggacaatgagtttattgcaaataacctattagtt---tacattgaaaaatacattattaatctat 484  Q
    |||||||||||||||| |||| ||| ||| |||||||||||||||| |||   ||||||| |||| |||||||||||||||    
T  37614591 cataaacaaattaaatagacattgaatttcttgcaaataacctatttgtttactacattggaaaagacattattaatctat 37614671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 404
Target Start/End: Complemental strand, 8230431 - 8230255
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatg--attgatagatttaatt 327  Q
    |||||| ||||||| ||||||| ||||||| |||| ||||  |||||||  |||||||||||| | || | ||||||||  |  ||||||||||||| ||    
T  8230431 aaataaaaaatatttagctaccccaaacaaatttatttgttaaaaattaacataaataagaaatttaagaaattactacgggatattgatagatttattt 8230332  T
Q  328 atattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaata 404  Q
     |||| |||  | |||||| || |||||||||| | | || |||||||||  || |||||||||| |||| ||||||    
T  8230331 gtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaata 8230255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 404
Target Start/End: Complemental strand, 35524968 - 35524792
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgat--tgatagatttaatt 327  Q
    |||||| ||||||| ||||||| |||| || |||| ||||  |||||||  |||||||||||| | || | ||||||||  |||  ||||||||||| ||    
T  35524968 aaataaaaaatatttagctaccccaaataaatttatttgttaaaaattaacataaataagaaatttaagaaattactacgggatattgatagatttattt 35524869  T
Q  328 atattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaata 404  Q
     |||| |||  | |||||| || |||||||||| | | || |||||||||  || |||||||||| |||| ||||||    
T  35524868 gtattagttcaacactttcggtctcaataacaaatttggagaaaacttttggaagaataaaaattgtcaaaacaata 35524792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 484
Target Start/End: Complemental strand, 35524747 - 35524700
Alignment:
Q  437 ttgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
    ||||||||||| |||| ||||||||||||||| ||||||||| |||||    
T  35524747 ttgcaaataacttatttgtttacattgaaaaagacattattagtctat 35524700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 408
Target Start/End: Original strand, 31106830 - 31106864
Alignment:
Q  374 tttttcaacaataaaaattatcaagacaatattca 408  Q
    ||||||||||||||||||||||||||||| |||||    
T  31106830 tttttcaacaataaaaattatcaagacaagattca 31106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 45656103 - 45656053
Alignment:
Q  220 cggctatcctaaataataaatattgagctacctcaaacaagtttagttgtc 270  Q
    |||||| || |||||||||||||||||||||| ||||||| || |||||||    
T  45656103 cggctaccccaaataataaatattgagctaccccaaacaaattcagttgtc 45656053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 230 - 331
Target Start/End: Complemental strand, 42799397 - 42799296
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||| ||| ||||||  ||||||| || ||||  | || ||||| || ||||||||||||||   |||||||| ||||||||| ||||| ||||    
T  42799397 aaataataaacattcagctacaccaaacaaattcagtttccgaatattagcatgaataagaaagtaaatgcattactacttgattgataaatttatttat 42799298  T
Q  330 at 331  Q
    ||    
T  42799297 at 42799296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 543
Target Start/End: Complemental strand, 14802726 - 14802674
Alignment:
Q  491 tcaattatggataaaattggtttcttgaaatacattttgtccaacttttctaa 543  Q
    ||||||||  |||||||||| |||||||||  | |||||||||||||||||||    
T  14802726 tcaattataaataaaattggcttcttgaaacgcgttttgtccaacttttctaa 14802674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 230 - 484
Target Start/End: Complemental strand, 428603 - 428351
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattat 329  Q
    |||||||||| |||||||||||  ||| || || ||||||| |||||||  |||||||| ||||||||||||| | |||||||||||| |||||| ||||    
T  428603 aaataataaacattgagctaccctaaataaattcagttgtcaaaaattaatataaataataaagtaaaaatatcaatacatgattgatggatttatttat 428504  T
Q  330 attggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaaattaaatggacaat 429  Q
     |||||||||| ||| | || ||||||| | ||||||| ||||| ||||||||  |||||||||| ||||||||| | ||||||||||||||||||||||    
T  428503 tttggtttgatgcttaccgtctcaataatagttatagagaaaac-ttttcaacggtaaaaattattaagacaatagtaataaacaaattaaatggacaat 428405  T
Q  430 gagtttattgcaaataacctattagtttacattgaaaaatacattattaatctat 484  Q
     ||||| || ||||||| ||||| | |||||||| ||||||||||||||||||||    
T  428404 -agtttcttacaaataatctatttgcttacattggaaaatacattattaatctat 428351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 216 - 543
Target Start/End: Complemental strand, 292522 - 292192
Alignment:
Q  216 tatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 315  Q
    ||||||||||||| |||||||||| |||||| ||  ||||| |||||  ||   | ||||||   |||||||| |||||||||| ||||| ||| || ||    
T  292522 tatccggctatcccaaataataaacattgagttatttcaaataagttccgtca-caaaaatttacataaataataaagtaaaaaaattaccacaagactg 292424  T
Q  316 atagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcataaacaa 415  Q
    ||||||||| || |||||||||||||||  |  | |||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||| ||||    
T  292423 atagatttatttgtattggtttgatactcccgatctcaataacaactatagagaagcctttttcaacaataaaaattatcaagacaatattcatagacaa 292324  T
Q  416 attaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaatcta----taatcgctcaattatggataaaattggt 511  Q
    |||||||| ||||||||||| |||| |||||||||||  |||| |||  |||| ||| ||||||||||    ||| |   ||||||| ||| |||||||     
T  292323 attaaatgaacaatgagtttcttgcgaataacctatttatttatatttgaaaagacactattaatctattattaaacaggcaattattgatgaaattggg 292224  T
Q  512 ttcttgaaatacattttgtccaacttttctaa 543  Q
    ||||||||| |||||||| ||||| |||||||    
T  292223 ttcttgaaacacattttgcccaacgtttctaa 292192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 200 - 479
Target Start/End: Original strand, 6500 - 6773
Alignment:
Q  200 ggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaataagaaagtaaaaa 299  Q
    |||||||||| || ||||| |||||| |  |||||||||||||||||||||  ||||||| ||| |||| | |||||||| |||||||| ||| ||||||    
T  6500 ggtcggtatgtatttttattcggctacctcaaataataaatattgagctactccaaacaaatttcgttg-caaaaattagcataaataataaa-taaaaa 6597  T
Q  300 tattactacatgattgatagatttaattatattggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaaga 399  Q
     ||||||||| |||||||||||||| || ||||  ||||||||| ||  | ||||||||||   |||| |||  ||||||||||||||||||||   |||    
T  6598 -attactacaagattgatagatttatttgtatttatttgatactctcgatctcaataacaacactagagaaacttttttcaacaataaaaatta---aga 6693  T
Q  400 caatattcataaacaaattaaatggacaatgagtttattgcaaataacctattagtttacattgaaaaatacattattaa 479  Q
    ||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||  ||||||||  |||| ||||||||||    
T  6694 caatagtcatagacaaattaaatggacaatgaatttcttgcaaataacctatttatttacatttgaaaagacattattaa 6773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1554 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: scaffold1554
Description:

Target: scaffold1554; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 233 - 409
Target Start/End: Original strand, 637 - 812
Alignment:
Q  233 taataaatattgagctacctcaaacaa-gtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatat 331  Q
    ||||||| ||||| ||||||||||||| ||| | ||| | |||||||| |||||||| |||||||||| | ||||| | |||||||||||||| || |||    
T  637 taataaacattgaactacctcaaacaaagttcacttg-caaaaattagcataaataataaagtaaaaaaactactaaaagattgatagatttatttgtat 735  T
Q  332 tggtttgatactttcagtttcaataacaattatagataaaactttttcaacaataaaaattatcaagacaatattcat 409  Q
    |||||||||| |||| || | ||||||||  ||||| ||| |||||||||||||||||||||||||||||||| ||||    
T  736 tggtttgata-tttcggtctaaataacaacaatagagaaacctttttcaacaataaaaattatcaagacaatagtcat 812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1709 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 1282 - 1437
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||| ||  |||||||||| || ||||||||||||  | |||||||||||||||| ||||| |||| || ||| |||| | |||||||  | ||||    
T  1282 ttattctttaagtggtcggtatgtatttttatccggctactccaaataataaatattgaactaccccaaataaatttcgttg-caaaaattaacacaaat 1380  T
Q  287 aagaaagtaaaaatattactacatgattgatagatttaattatattggtttgatact 343  Q
    ||  ||||||||| ||||||||| |||||||||||||| || |||| ||||||||||    
T  1381 aatgaagtaaaaaaattactacaagattgatagatttatttgtatttgtttgatact 1437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 6959 - 7059
Alignment:
Q  187 ttattcttcaatcggtcggtatgcatatttatccggctatcctaaataataaatattgagctacctcaaacaagtttagttgtctaaaattaggataaat 286  Q
    |||||||||||| | | |||||  || | |||||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||||||| ||||||    
T  6959 ttattcttcaattgtttggtataaatttatatccggctaacctaaataataaatattgagctacc-caaacaaatttagttgtcgaaaattagcataaat 7057  T
Q  287 aa 288  Q
    ||    
T  7058 aa 7059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 366
Target Start/End: Original strand, 20199 - 20336
Alignment:
Q  230 aaataataaatattgagctacctcaaacaagtttagtt-gtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaatta 328  Q
    |||||||||||||||||||||| |||| || ||| ||| ||| |||||||| ||||||||||||  ||||    | |||||||||||| |||| || |||    
T  20199 aaataataaatattgagctaccccaaataaatttggtttgtcgaaaattagcataaataagaaaaaaaaa----tgctacatgattgacagatatattta 20294  T
Q  329 ta----ttggtttgatactttcagtttcaataacaattatag 366  Q
    ||    || | ||||||||||| || |||||||||| |||||    
T  20295 tacgggtttgattgatactttctgtctcaataacaactatag 20336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 211914 - 211997
Alignment:
Q  254 aaacaagtttagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattgatagatttaattatattggtttg 338  Q
    |||||||||| |||| | |||||||  || ||||||||||| |||| | |||||||| |||||||||||||  | ||||||||||    
T  211914 aaacaagtttggttgccgaaaattaacattaataagaaagtgaaaa-agtactacatcattgatagatttatgtgtattggtttg 211997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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