View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_12 (Length: 554)
Name: NF21193_high_12
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 146 - 499
Target Start/End: Complemental strand, 38014777 - 38014424
Alignment:
| Q |
146 |
attctcttaaaagtgcataccctatgcatggacactttggttcagtgttcatttcatctactcatacttaatatacatcaaacctgcttgcttccctgtt |
245 |
Q |
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| T |
38014777 |
attctcttaaaagtgcataccctatggttagacactttggttcagtgttcattttatctactcatacttaatatacgtcaaacctgcttgcttccctgtt |
38014678 |
T |
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| Q |
246 |
tatgtttttatttgctttgtttgcagcttgagaaaggagagaatttcgttgatgtgcttaacccttgcacaaaaaaggagactctagcatatggagactc |
345 |
Q |
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| T |
38014677 |
taagtttatatttgctttgtttgcagcttgaggaaggagaggatttcactgatgtgcttaacccttgcacaaaaaaggagactctagcatatggagactc |
38014578 |
T |
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| Q |
346 |
caatatgcaaaatcttaagcgtggagaagtattacagctggagagaaagggatatttcaggtgtgatgtacccttcgtctggccttcggaaccaaccgtg |
445 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||| |||| |
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| T |
38014577 |
caatatgcgaaatcttaagcgtggagaagtattgcagctggagagaaagggatattttaggtgtgatgtacccttcgtccggccttcgaaaccaatcgtg |
38014478 |
T |
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| Q |
446 |
ttatttgcaatcccagatggcaggcagcagacatctttgaagtaaaaaactttt |
499 |
Q |
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| T |
38014477 |
ttatttgcaatcccagatggcaggcagcagacatctttgaagtaaaaatctttt |
38014424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 11 - 174
Target Start/End: Complemental strand, 38015023 - 38014849
Alignment:
| Q |
11 |
ttatactgcaaggtgtttatgcaattgtgcatcttaccatatatgttataagaatttgttaacgactattatctgacctttcatgaaccttccatggatc |
110 |
Q |
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|||||||| ||||||||||||||||| ||||||| ||||| ||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
38015023 |
ttatactgtaaggtgtttatgcaattctgcatctc-ccataaatgttataagaatttattaacggctattgtctgacctttcatgaaccttccatggaac |
38014925 |
T |
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| Q |
111 |
tagttttatagcacc------------atattgtccatcctgatcccattctcttaaaagtgcataccctatgcat |
174 |
Q |
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| T |
38014924 |
tagttttatagcacctaattgtccttattactgtccatcctgatcccattctcttaaaagtggataccctatgcat |
38014849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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