View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21193_high_15 (Length: 529)

Name: NF21193_high_15
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21193_high_15
NF21193_high_15
[»] chr1 (3 HSPs)
chr1 (55-522)||(48672965-48673433)
chr1 (471-506)||(18470188-18470223)
chr1 (471-516)||(16026107-16026152)
[»] chr4 (5 HSPs)
chr4 (453-507)||(53769886-53769940)
chr4 (454-494)||(22889568-22889608)
chr4 (454-494)||(22941232-22941272)
chr4 (471-506)||(48194449-48194484)
chr4 (469-507)||(31095103-31095141)
[»] chr7 (1 HSPs)
chr7 (471-515)||(1532196-1532240)
[»] chr6 (1 HSPs)
chr6 (467-507)||(10544282-10544322)
[»] chr3 (3 HSPs)
chr3 (471-506)||(51265950-51265985)
chr3 (453-507)||(9343215-9343269)
chr3 (452-497)||(38457015-38457060)
[»] chr2 (1 HSPs)
chr2 (402-445)||(691066-691109)
[»] chr8 (1 HSPs)
chr8 (472-525)||(37064522-37064575)
[»] scaffold0591 (1 HSPs)
scaffold0591 (472-516)||(3938-3982)


Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 55 - 522
Target Start/End: Original strand, 48672965 - 48673433
Alignment:
Q  55 aaatcttaggtgttacaacgtacggagaacatcgttggaattccaatagaaaaccctgaagatcacactgaagcttcaaggacatgaaactccaataaac 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48672965 aaatcttaggtgttacaacgtacggagaacatcgttggaattccaataaaaaaccctgaagatcacactgaagcttcaaggacatgaaactccaataaac 48673064  T
Q  155 tgtcaactacatgttcattaatgcgcacgtgcaaacgacaaaatggtgagtaattgaaattatgaaggacaaaacataggtaattgagacaccgattata 254  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48673065 tgtcaactacatgttcattaatgcgcacatgcaaacgacaaaatggtgagtaattgaaattatgaaggacaaaacataggtaattgagacaccgattata 48673164  T
Q  255 gtatcatattgctagctccatgtccacgaggatcttgattagatgaggatgaacgcctcattcatgccggtgaccctatatctgaaaccttaaaaaatat 354  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48673165 gtatcatattactagctccatgtccatgaggatcttgattagatgaggatgaacgcctcattcctgccggtgaccctatatctgaaaccttaaaaaatat 48673264  T
Q  355 aaaatgatctcaaacagaaagtcagaaatactaatgcgaaagttcgataattaagaaaactttgctataatggaaagctggtaatataaaatatagttta 454  Q
    ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  48673265 aaaatgatctcaaacagaaagtcagaaatactaatacaaaagttcggtaattaagaaaactctgctataatggaaagttggtaatataaaatatagttta 48673364  T
Q  455 aattacattagtgatcc-tttaagttatttaattataataagttgatcatttaaattattttcatatca 522  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  48673365 aattacattagtgatccttttaagttatttaattataacaagttggtcatttaaattattttcatatca 48673433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 506
Target Start/End: Original strand, 18470188 - 18470223
Alignment:
Q  471 ctttaagttatttaattataataagttgatcattta 506  Q
    ||||||||||||||||| ||||||||||||||||||    
T  18470188 ctttaagttatttaattgtaataagttgatcattta 18470223  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 516
Target Start/End: Original strand, 16026107 - 16026152
Alignment:
Q  471 ctttaagttatttaattataataagttgatcatttaaattattttc 516  Q
    ||||||||||||||||| ||||||||| |||||||| ||| |||||    
T  16026107 ctttaagttatttaattgtaataagttaatcatttacatttttttc 16026152  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 507
Target Start/End: Complemental strand, 53769940 - 53769886
Alignment:
Q  453 taaattacattagtgatcctttaagttatttaattataataagttgatcatttaa 507  Q
    ||||||| || || |||||||||| |||||||||||||||||||||||| |||||    
T  53769940 taaattatatgagagatcctttaaattatttaattataataagttgatcctttaa 53769886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 22889568 - 22889608
Alignment:
Q  454 aaattacattagtgatcctttaagttatttaattataataa 494  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  22889568 aaattacattagagatcatttaagttatttaattataataa 22889608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 494
Target Start/End: Original strand, 22941232 - 22941272
Alignment:
Q  454 aaattacattagtgatcctttaagttatttaattataataa 494  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  22941232 aaattacattagagatcatttaagttatttaattataataa 22941272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 506
Target Start/End: Complemental strand, 48194484 - 48194449
Alignment:
Q  471 ctttaagttatttaattataataagttgatcattta 506  Q
    ||||||||||||||||| ||||||||||||||||||    
T  48194484 ctttaagttatttaattgtaataagttgatcattta 48194449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 31095103 - 31095141
Alignment:
Q  469 tcctttaagttatttaattataataagttgatcatttaa 507  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  31095103 tcctttaagttatttaattataacaagttaatcatttaa 31095141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 471 - 515
Target Start/End: Original strand, 1532196 - 1532240
Alignment:
Q  471 ctttaagttatttaattataataagttgatcatttaaattatttt 515  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||    
T  1532196 ctttaagttatttaattgtaataagttgatcatttacattttttt 1532240  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 507
Target Start/End: Complemental strand, 10544322 - 10544282
Alignment:
Q  467 gatcctttaagttatttaattataataagttgatcatttaa 507  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  10544322 gatccattaagttaattaattataataagttgatcatttaa 10544282  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 506
Target Start/End: Complemental strand, 51265985 - 51265950
Alignment:
Q  471 ctttaagttatttaattataataagttgatcattta 506  Q
    ||||||||||||||||| ||||||||||||||||||    
T  51265985 ctttaagttatttaattgtaataagttgatcattta 51265950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 507
Target Start/End: Complemental strand, 9343269 - 9343215
Alignment:
Q  453 taaattacattagtgatcctttaagttatttaattataataagttgatcatttaa 507  Q
    ||||||||||  | ||| |||||||||||||||||||||||||||| || |||||    
T  9343269 taaattacatcggagattctttaagttatttaattataataagttggtcctttaa 9343215  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 497
Target Start/End: Original strand, 38457015 - 38457060
Alignment:
Q  452 ttaaattacattagtgatcctttaagttatttaattataataagtt 497  Q
    |||||||||  | |||||| ||||||||||||||||||||||||||    
T  38457015 ttaaattacggttgtgatcatttaagttatttaattataataagtt 38457060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 445
Target Start/End: Original strand, 691066 - 691109
Alignment:
Q  402 taattaagaaaactttgctataatggaaagctggtaatataaaa 445  Q
    |||||||||||||| ||||||||||||||| || ||||||||||    
T  691066 taattaagaaaactatgctataatggaaagatgataatataaaa 691109  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 37064522 - 37064575
Alignment:
Q  472 tttaagttatttaattataataagttgatcatttaaattattttcatatcactc 525  Q
    |||||||||||||||||||||||||||||  ||||| || ||||  ||||||||    
T  37064522 tttaagttatttaattataataagttgatgttttaagtttttttggtatcactc 37064575  T

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Target: scaffold0591 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 472 - 516
Target Start/End: Complemental strand, 3982 - 3938
Alignment:
Q  472 tttaagttatttaattataataagttgatcatttaaattattttc 516  Q
    |||| ||||||||||| |||||| |||||||||||| ||||||||    
T  3982 tttatgttatttaattgtaataaattgatcatttaagttattttc 3938  T

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