View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_19 (Length: 452)
Name: NF21193_high_19
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Complemental strand, 46904 - 46472
Alignment:
| Q |
6 |
ggcaatacctttctcttatgtgaaggtacacatgtgcatgtgtgtgagagagaaggaaaggagatgagggagggagaggttaccacagtcagatcaacaa |
105 |
Q |
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| T |
46904 |
ggcaatacctttctcttatgtgaaggtacacatgtgcatgtgtgtgagagagaaggaaatgagatgagggagggagaggttaccacagtcagatcaacaa |
46805 |
T |
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| Q |
106 |
acacttttgtcatatacgatttcaatgctgaagaatgcttcttgaaatactcttcctctctatgatcaagcttctcttcaatttctttaggaatcacagg |
205 |
Q |
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| T |
46804 |
acacttttgacatatacgatttcaatgctgaagaatgcttcttgaaatactcttcctctctatgatcaagcttctcttcaatttctttaggaatcacagg |
46705 |
T |
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| Q |
206 |
ccctatcttccataacaagttccgtatagtttctgctcgattatacctatatggatatatgttcagagtcaaagaacaaaaacacaggaactacgcagta |
305 |
Q |
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| T |
46704 |
ccctatcttccataacaagttccgtatagtttctgctcgattatacctatatggatatatgttcatagtcaaagaacaaaaacacaggaactacgcagta |
46605 |
T |
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| Q |
306 |
aggtggcatttgaaagtgatacttacacgtaggccgttagacaacgtttatttcggactatagaaaataggtggatgagggctccgtagtggtcagcatt |
405 |
Q |
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| T |
46604 |
aggtggcatttgaaagtgatacttacacataggccgttagacaacgtttatttcggactatagaaaataggtggatgagggctccgtagtggtcagcatt |
46505 |
T |
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| Q |
406 |
tctagcagtttggacatccaaaccttcttcctg |
438 |
Q |
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| T |
46504 |
tctagcagtttggacatccaaaccttcttcctg |
46472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 8 - 438
Target Start/End: Complemental strand, 21360311 - 21359887
Alignment:
| Q |
8 |
caatacctttctcttatgtgaaggtacacatgtgcatgtgtgtgagagagaaggaaaggagatgagggagggagaggttaccacagtcagatcaacaaac |
107 |
Q |
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| T |
21360311 |
caatacatttctcttgtgcgaaggtacacatgg--atatgtgtgagagaaaaggaaaggagacgagggaaggagaggttaccacagtcagatcaacaaac |
21360214 |
T |
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| Q |
108 |
acttttgtcatatacgatttcaatgctgaagaatgcttcttgaaatactcttcctctctatgatcaagcttctcttcaatttctttaggaatcacaggcc |
207 |
Q |
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| T |
21360213 |
acttttgacatataagatttcaatgctgaagaatgcttcttgaaatactcttcctccctatgatcaagcttctcttcaatttctttaggaatcacaggcc |
21360114 |
T |
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| Q |
208 |
ctatcttccataacaagttccgtatagtttctgctcgattatacctatatggatatatgttcagagtcaaagaacaaaaacacaggaactacgcagtaag |
307 |
Q |
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| T |
21360113 |
ctatcttccataacaagctccgtatagtttctgctcgattatacctggatggatatatgttcagagtcaaagaacaaaaagatag----tacgcaggaag |
21360018 |
T |
|
| Q |
308 |
gtggcatttgaaagtgatacttacacgtaggccgttagacaacgtttatttcggactatagaaaataggtggatgagggctccgtagtggtcagcatttc |
407 |
Q |
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| T |
21360017 |
gtggcatttgaaagcgatacttacacataggccattagacaacgtttatttcggactatagaaaataggtggatgagggctccgtagtggtcagcatttc |
21359918 |
T |
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| Q |
408 |
tagcagtttggacatccaaaccttcttcctg |
438 |
Q |
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| T |
21359917 |
tagcagtttggacatccaaaccttcttcctg |
21359887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 48 - 242
Target Start/End: Original strand, 18381790 - 18381984
Alignment:
| Q |
48 |
tgtgagagagaaggaaaggagatgagggagggagaggttaccacagtcagatcaacaaacacttttgtcatatacgatttcaatgctgaagaatgcttct |
147 |
Q |
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||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||| | |||||||| | |||| ||||||||| || ||||||||||| |
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| T |
18381790 |
tgtgacagaaaagggaaggagatgaaggagggagaggttaccacagtcagatcaactagcacttttgacttataagatttcaatcatgcagaatgcttct |
18381889 |
T |
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| Q |
148 |
tgaaatactcttcctctctatgatcaagcttctcttcaatttctttaggaatcacaggccctatcttccataacaagttccgtatagtttctgct |
242 |
Q |
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| T |
18381890 |
taaaataatcttcctcccaatgattaagcttctcttctatttctttaggaagcaagggtcctatcttccataacaagtttcgtgtagtttctgct |
18381984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 373
Target Start/End: Original strand, 18382069 - 18382118
Alignment:
| Q |
324 |
atacttacacgtaggccgttagacaacgtttatttcggactatagaaaat |
373 |
Q |
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| T |
18382069 |
atacttacacatagggtgttagacaacctttatttcgaactatagaaaat |
18382118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 438
Target Start/End: Original strand, 18382128 - 18382165
Alignment:
| Q |
401 |
gcatttctagcagtttggacatccaaaccttcttcctg |
438 |
Q |
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| T |
18382128 |
gcatttctagccgtttggacatccaatccttcttcctg |
18382165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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