View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_2 (Length: 814)
Name: NF21193_high_2
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 485 - 798
Target Start/End: Complemental strand, 15158670 - 15158357
Alignment:
| Q |
485 |
ctatgacttcatagaaaagtaagcagttaccaacttcttacttttcgaatttttactagtttgaccattgtgtaaaaggtattttggagtaggaagaaag |
584 |
Q |
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| T |
15158670 |
ctatgacttcatagaaaagtaagcagttaccaacttcttacttttcgaacttttactagtttgacatttgtgtaaaaggtattttggagtaggaagaaag |
15158571 |
T |
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| Q |
585 |
cacacatatgtagtattgtttgattattggggtagagtggattcaccatacaaaaatatttcaaagggttatgagattaattggttgcttcattatggta |
684 |
Q |
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| T |
15158570 |
cacacatatgtagtattgtttgattattggggtagagtggatccaccatacaaaaatatttcaaagggttatgagattaattggttgcttcattatggta |
15158471 |
T |
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| Q |
685 |
aatcaggacaaaattaatgtttggtgggtaatccgtaatgtattaattgcttaattagaggggatttttagtcatttgaatttcataggctagggactaa |
784 |
Q |
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| T |
15158470 |
aatcaggacaaaattaatgtttggtgggtaatccgtaatgtattaattgcttaattagagggaatttttagtcatttgaatttcataggctagggactaa |
15158371 |
T |
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| Q |
785 |
atgggcatgataag |
798 |
Q |
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| T |
15158370 |
atgggcatgataag |
15158357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 191 - 378
Target Start/End: Complemental strand, 15158957 - 15158770
Alignment:
| Q |
191 |
ttttctagtcatttttgttggtatatttggtgagaggtttaagattctataaggttagtgtgaaacggttgaggaaaagtgtactaggtgtgtgtccatt |
290 |
Q |
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| T |
15158957 |
ttttctagtcatttttgttggtatatttggtgagaggtttaaaattctataaggttagtgtgaaacggttgaggaaaagcgtactaggtgtgtgtccatt |
15158858 |
T |
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| Q |
291 |
taaatagggtagagggagaacataatgggagagagacaagacatggaaagaagttatgttaactaagatttgataggaaaatgtgtag |
378 |
Q |
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| T |
15158857 |
taaatagggtagagggagaacataatgggagagagacaagacatggaaagaagttatgttaactaagatttgataggaaaatgtgtag |
15158770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 15159147 - 15159013
Alignment:
| Q |
1 |
gtgcaaaagaagatgatggtgttgaagcaaaagaatcatgtcttgttaaagaggttttaaatgattgcaatcttctcattgttgcatgataatttccatc |
100 |
Q |
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| T |
15159147 |
gtgcaaaagaagatgatggtgttgaagcaaaagaatcatgtcttgttaaagaggttttaaatgattgcaattttctcattgttacatgataatttccatc |
15159048 |
T |
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| Q |
101 |
agaaattttcctagtaggtaaatttttgtcaccat |
135 |
Q |
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| T |
15159047 |
agaaattttcctagcaggtaaatttttgtcaccat |
15159013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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