View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21193_high_21 (Length: 451)

Name: NF21193_high_21
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21193_high_21
NF21193_high_21
[»] chr5 (5 HSPs)
chr5 (235-437)||(588358-588560)
chr5 (1-145)||(588650-588794)
chr5 (251-437)||(10486005-10486191)
chr5 (251-421)||(31865164-31865332)
chr5 (254-437)||(35121794-35121977)
[»] chr7 (5 HSPs)
chr7 (254-429)||(12378074-12378249)
chr7 (297-435)||(46626675-46626813)
chr7 (335-437)||(13440909-13441011)
chr7 (369-437)||(45993427-45993495)
chr7 (326-435)||(36227329-36227438)
[»] chr4 (11 HSPs)
chr4 (252-435)||(7662412-7662595)
chr4 (335-437)||(23872664-23872766)
chr4 (251-390)||(23279701-23279840)
chr4 (335-437)||(55299472-55299574)
chr4 (362-437)||(3129190-3129265)
chr4 (335-437)||(20675886-20675988)
chr4 (335-436)||(19115288-19115389)
chr4 (369-436)||(8935926-8935993)
chr4 (369-435)||(19648548-19648614)
chr4 (326-437)||(29552979-29553090)
chr4 (341-402)||(26694814-26694875)
[»] chr3 (4 HSPs)
chr3 (251-435)||(30166426-30166610)
chr3 (335-437)||(6175664-6175766)
chr3 (249-402)||(42674539-42674692)
chr3 (251-406)||(36709791-36709946)
[»] scaffold0029 (1 HSPs)
scaffold0029 (284-437)||(133981-134134)
[»] scaffold0002 (1 HSPs)
scaffold0002 (284-437)||(311809-311962)
[»] scaffold0418 (1 HSPs)
scaffold0418 (296-435)||(8457-8596)
[»] chr2 (4 HSPs)
chr2 (296-435)||(45422373-45422512)
chr2 (335-433)||(13551437-13551535)
chr2 (369-406)||(8065482-8065519)
chr2 (326-429)||(25380571-25380675)
[»] scaffold0131 (1 HSPs)
scaffold0131 (249-437)||(3649-3837)
[»] chr8 (7 HSPs)
chr8 (321-435)||(7453205-7453319)
chr8 (251-420)||(23942955-23943124)
chr8 (326-406)||(43612363-43612443)
chr8 (369-437)||(16375324-16375392)
chr8 (369-435)||(4987286-4987352)
chr8 (395-435)||(12332701-12332741)
chr8 (326-402)||(43611369-43611445)
[»] chr1 (5 HSPs)
chr1 (335-437)||(48072613-48072715)
chr1 (335-437)||(32352499-32352601)
chr1 (335-433)||(5497941-5498039)
chr1 (369-435)||(25504213-25504279)
chr1 (254-408)||(20796540-20796694)
[»] chr6 (4 HSPs)
chr6 (335-437)||(15674683-15674785)
chr6 (369-437)||(33640768-33640836)
chr6 (335-433)||(26206188-26206286)
chr6 (326-435)||(11469420-11469529)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 235 - 437
Target Start/End: Complemental strand, 588560 - 588358
Alignment:
Q  235 ttctctcaaaattcttttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaac 334  Q
    ||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||    
T  588560 ttctctcaaaattcttttgagttgtaaagtgggaaagatttcttttgtttacttaggcttacctattggcggtaatctgcggcgtcttagcttttgggac 588461  T
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  588460 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgcttggtacttctaaaatctgtcttgacctctc 588361  T
Q  435 tgc 437  Q
    |||    
T  588360 tgc 588358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 588794 - 588650
Alignment:
Q  1 tcagaaaaacaagtatctcctctcctaatcatacatttcataatcaaaacaaaggacagatacatatgacatctcaaaatcaaataaaatacatataaaa 100  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  588794 tcagaaaaacaagtatcgcctctcctaatcattcatttcataatcaaaacaaaggacaaatacatatgacatctcaaaatcaaataaaatacatataaaa 588695  T
Q  101 tgtatacatgccactaccacattgtttcacaaagagaataggtac 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  588694 tgtatacatgccactaccacattgtttcacaaagagaataggtac 588650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 251 - 437
Target Start/End: Original strand, 10486005 - 10486191
Alignment:
Q  251 ttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaa 350  Q
    ||||| || |||||||| ||| ||| |||  | ||||| ||||| |||||||| ||||||| ||| ||| |||| |||||| ||||||||||| ||||||    
T  10486005 ttgagctgcaaagtgggtaaggttcctttcttgtacttgggcttgcctattgggggtaatccgcgtcgtcttagtttttgggaccctattgtgcatcgaa 10486104  T
Q  351 ttcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |  |||||||||||||| ||||||||||||| ||||| || || || || |||||||| ||| |||||||||||||||| |||||||    
T  10486105 tcaaagctagacttacgggttggaatagccggtttctttcctttggaggacgtttggttcttttaaaatctgtcttgacttctctgc 10486191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 251 - 421
Target Start/End: Complemental strand, 31865332 - 31865164
Alignment:
Q  251 ttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaa 350  Q
    ||||||||||||||||| ||| ||| ||| || |  || ||||| | |||||| |||||||||||| |  ||| ||||||  |||||||||||||||| |    
T  31865332 ttgagttgtaaagtgggtaaggttcctttcgtat--ttgggcttgcttattgggggtaatctgcggagacttaacttttgagaccctattgtgaatcgta 31865235  T
Q  351 ttcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatct 421  Q
    || || ||||  |  || ||||||| ||||||||||||||||| || ||||| ||||| || || ||||||    
T  31865234 ttaaatctaggttgtcgggttggaaaagccgatttctctcttttggaggccgcttggttctacttaaatct 31865164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 437
Target Start/End: Original strand, 35121794 - 35121977
Alignment:
Q  254 agttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgt-tttagcttttggaaccctattgtgaatcgaatt 352  Q
    |||||||||||||| ||| ||| |||| | ||| || | || |||||||| ||||||| |||| |  ||||| |||||| | ||| |||||||| | |||    
T  35121794 agttgtaaagtgggtaaggttccttttttgtacctatgtttgcctattgggggtaatccgcggagactttag-ttttgggatcctgttgtgaatagtatt 35121892  T
Q  353 caagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
     || |||||||  || | || ||||||||||||||||| || ||||| || ||| | || |||||||| || ||||| |||||||    
T  35121893 aaatctagactgtcgggatgcaatagccgatttctctcgtttggtggtcgcttgattctcctaaaatcagttttgacttctctgc 35121977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 254 - 429
Target Start/End: Original strand, 12378074 - 12378249
Alignment:
Q  254 agttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaattc 353  Q
    ||||| |||||||| ||| ||| |||| | ||||||||||| |||||||| ||||||||||  ||| |||| |||||| ||||||||||||||||||||     
T  12378074 agttgcaaagtgggtaaggttccttttttgtacttaggcttccctattgggggtaatctgcatcgtcttagtttttgggaccctattgtgaatcgaattg 12378173  T
Q  354 aagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgac 429  Q
    ||||||||  |||||||| |||||| || ||| |||| || || || |  ||||||||||||||||||||||||||    
T  12378174 aagctagaagtacgagtttgaatagtcggtttatctcctttggcggacacttggtacttctaaaatctgtcttgac 12378249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 297 - 435
Target Start/End: Complemental strand, 46626813 - 46626675
Alignment:
Q  297 ctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcgg 396  Q
    ||||||| ||||||| ||  |||  ||| |||||| | ||||||||| |||||||| |||||||||||||| ||||||||||||| ||||| || || ||    
T  46626813 ctattgggggtaatccgcatcgtcatagtttttgggatcctattgtgcatcgaattaaagctagacttacgggttggaatagccggtttctttcctttgg 46626714  T
Q  397 tggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
     || |||||||| ||  |||||||||||||||| |||||    
T  46626713 aggacgtttggttctgttaaaatctgtcttgacttctct 46626675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 437
Target Start/End: Complemental strand, 13441011 - 13440909
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||| ||| || |||||||  || |||||||||| || ||||||||||  ||||| || ||||| || || |||| ||||||||||||||    
T  13441011 cctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttgtggtggtcgcttggttctactcaaatatgtcttgacctctc 13440912  T
Q  435 tgc 437  Q
    |||    
T  13440911 tgc 13440909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 45993495 - 45993427
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |||||||||| || || |||||||| ||||| |||||||| ||||| |||||||| |||||||||||||    
T  45993495 gttggaatagtcgtttcctctcttttggtggtcgtttggttcttctcaaatctgtgttgacctctctgc 45993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 435
Target Start/End: Original strand, 36227329 - 36227438
Alignment:
Q  326 ttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtct 425  Q
    |||||| |||||||||||||||| ||| |  |||||||  || |||||||||||   |||||||| ||||||||||| ||| | ||||| ||| | || |    
T  36227329 ttttgggaccctattgtgaatcgcattaagtctagactgtcgggttggaatagcaagtttctctcgttcggtggccgcttgatccttcttaaagcagttt 36227428  T
Q  426 tgacctctct 435  Q
    |||| |||||    
T  36227429 tgacttctct 36227438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 252 - 435
Target Start/End: Original strand, 7662412 - 7662595
Alignment:
Q  252 tgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaat 351  Q
    |||| ||||||||||| ||| ||| |||| | ||||| ||||| |||||||| ||||||| ||| ||| |||| |||||| | |||||||||||||||||    
T  7662412 tgagctgtaaagtgggtaaggttccttttatgtacttgggcttgcctattgggggtaatccgcgtcgtcttagtttttgggatcctattgtgaatcgaat 7662511  T
Q  352 tcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    | |||||||||||| | ||||||||||||| ||||| || || || || |||||||| ||  |||||||||||||||| |||||    
T  7662512 taaagctagacttatgggttggaatagccggtttctttcctttggaggacgtttggttctgttaaaatctgtcttgacttctct 7662595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 437
Target Start/End: Original strand, 23872664 - 23872766
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||| ||| || |||||||  || |||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||||||    
T  23872664 cctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgtcttgacctctc 23872763  T
Q  435 tgc 437  Q
    |||    
T  23872764 tgc 23872766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 390
Target Start/End: Complemental strand, 23279840 - 23279701
Alignment:
Q  251 ttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaa 350  Q
    |||||||| |||||||| ||| ||| |||  | ||||| ||||| |||||| | |||||||  || ||| |||| ||||   |||||||| |||||||||    
T  23279840 ttgagttgcaaagtgggtaaggttcctttcctgtacttgggcttgcctattaggggtaatccacgtcgtcttagtttttatgaccctattttgaatcgaa 23279741  T
Q  351 ttcaagctagacttacgagttggaatagccgatttctctc 390  Q
    || || ||||||||||||||||||||| ||| ||||||||    
T  23279740 ttaaaactagacttacgagttggaataaccggtttctctc 23279701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 437
Target Start/End: Complemental strand, 55299574 - 55299472
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||| ||| || ||||| |  || |||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||||||    
T  55299574 cctattgtgaatcgtattaaatctagattgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgtcttgacctctc 55299475  T
Q  435 tgc 437  Q
    |||    
T  55299474 tgc 55299472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 3129190 - 3129265
Alignment:
Q  362 cttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |||||| |||||||| |||||||||| || || || || |||||||||||| |||||||||||||||| |||||||    
T  3129190 cttacgggttggaattgccgatttctttcctttggaggtcgtttggtacttttaaaatctgtcttgacttctctgc 3129265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 437
Target Start/End: Complemental strand, 20675988 - 20675886
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||| ||| || |||||||  || |||| ||||| || ||| ||||||| ||||| || ||||| || || |||||||||||||||||||    
T  20675988 cctattgtgaatcgtattaaatctagactgtcgggttgtaatagtcggtttttctcttttggtggtcgcttggttctactcaaatctgtcttgacctctc 20675889  T
Q  435 tgc 437  Q
    |||    
T  20675888 tgc 20675886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 335 - 436
Target Start/End: Complemental strand, 19115389 - 19115288
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    ||||||||||||||  || ||||| ||||  || |||||||||| || || |||||||| |||||||| ||||| ||||| ||| |||||||||| ||||    
T  19115389 cctattgtgaatcgtgttaaagctcgactgtcgggttggaatagtcgtttcctctcttttggtggccgcttggttcttctcaaagctgtcttgacttctc 19115290  T
Q  435 tg 436  Q
    ||    
T  19115289 tg 19115288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 369 - 436
Target Start/End: Complemental strand, 8935993 - 8935926
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctg 436  Q
    |||||||||| || || |||||||| ||| |||||||||| ||||| |||||||| ||||||||||||    
T  8935993 gttggaatagtcgtttcctctcttttggttgccgtttggttcttctcaaatctgtgttgacctctctg 8935926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Complemental strand, 19648614 - 19648548
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    |||||||||| || || |||||||| | |||||||||||| ||||| |||||||| |||||||||||    
T  19648614 gttggaatagtcgtttcctctcttttgctggccgtttggttcttctcaaatctgtgttgacctctct 19648548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 326 - 437
Target Start/End: Original strand, 29552979 - 29553090
Alignment:
Q  326 ttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtct 425  Q
    |||||| | |||||||||||||| |||  | |||||||  || ||||||||||  | || || ||||| ||||| |||||||| ||||| ||| ||||||    
T  29552979 ttttgggatcctattgtgaatcgtattagaactagactgtcgggttggaatagttgtttcctttcttttggtggtcgtttggttcttctcaaagctgtct 29553078  T
Q  426 tgacctctctgc 437  Q
    |||| |||||||    
T  29553079 tgacttctctgc 29553090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 402
Target Start/End: Complemental strand, 26694875 - 26694814
Alignment:
Q  341 gtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccg 402  Q
    |||||||| ||| || ||||||| ||| ||||||||||  ||||||||||||| ||||||||    
T  26694875 gtgaatcgcattaaatctagactgacgggttggaatagtagatttctctcttttggtggccg 26694814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 251 - 435
Target Start/End: Original strand, 30166426 - 30166610
Alignment:
Q  251 ttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaa 350  Q
    ||||| ||||||||||| ||| ||| |||| | ||||| ||||| |||||||| || |||| ||| ||| |||| |||||| | ||||||||||||||||    
T  30166426 ttgagctgtaaagtgggtaaggttccttttatgtacttgggcttgcctattgggggaaatccgcgtcgtcttagtttttgggatcctattgtgaatcgaa 30166525  T
Q  351 ttcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    || |||||||||||| | ||||||||||||| ||||| || || || || |||||||| ||  |||||||||||||||| |||||    
T  30166526 ttaaagctagacttatgggttggaatagccggtttctttcctttggaggacgtttggttctgttaaaatctgtcttgacttctct 30166610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 437
Target Start/End: Original strand, 6175664 - 6175766
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||  ||| || |||||||  || |||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||| ||||    
T  6175664 cctattgtgaatcatattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgtcttgacatctc 6175763  T
Q  435 tgc 437  Q
    |||    
T  6175764 tgc 6175766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 402
Target Start/End: Original strand, 42674539 - 42674692
Alignment:
Q  249 ttttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcg 348  Q
    ||||||||||||||||||| |  |||| |||| | ||| ||||| | ||||| || ||||||| |||| |  ||   |||||| | || || ||||||||    
T  42674539 ttttgagttgtaaagtgggtagaattccttttttgtacctaggcctgcctataggtggtaatccgcggagacttcagttttgggaaccgatcgtgaatcg 42674638  T
Q  349 aattcaagctagacttacgagttggaatagccgatttctctctttcggtggccg 402  Q
     ||| || ||||||| ||||||||||||||  ||||||||||||| ||||||||    
T  42674639 cattaaatctagactgacgagttggaatagtagatttctctcttttggtggccg 42674692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 406
Target Start/End: Complemental strand, 36709946 - 36709791
Alignment:
Q  251 ttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaa 350  Q
    ||||||||||||||||  || |||| |||| | ||| ||||| | || || || ||||||| |||| | |||   |||||| | || || |||||||| |    
T  36709946 ttgagttgtaaagtggaaaaaattccttttatgtacctaggcctgccaataggtggtaatccgcggagatttcagttttgggaaccaatcgtgaatcgca 36709847  T
Q  351 ttcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttg 406  Q
    || || |||||||  || ||||||||||  ||||||| ||||||||||||||||||    
T  36709846 ttaaatctagactgtcgggttggaatagtagatttctttctttcggtggccgtttg 36709791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 437
Target Start/End: Original strand, 133981 - 134134
Alignment:
Q  284 tacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgat 383  Q
    ||||| |||||||||||||| |||||||  || ||  |||| |||||| ||||||||||| |||||||  || ||||||||||| ||||||||||||| |    
T  133981 tacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaataaaatctagacttacgggttggaatagccggt 134080  T
Q  384 ttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |||| || || ||||| || ||||||||| |||||||||||||||| |||||||    
T  134081 ttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgc 134134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 437
Target Start/End: Original strand, 311809 - 311962
Alignment:
Q  284 tacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgat 383  Q
    ||||| |||||||||||||| |||||||  || ||  |||| |||||| ||||||||||| |||||||  || ||||||||||| ||||||||||||| |    
T  311809 tacttgggcttacctattgggggtaatccacgtcggcttagtttttgggaccctattgtgcatcgaataaaatctagacttacgggttggaatagccggt 311908  T
Q  384 ttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |||| || || ||||| || ||||||||| |||||||||||||||| |||||||    
T  311909 ttctttcctttggtggacggttggtacttttaaaatctgtcttgacttctctgc 311962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 435
Target Start/End: Complemental strand, 8596 - 8457
Alignment:
Q  296 cctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcg 395  Q
    |||||||| ||||||| ||| ||| |||| |||||| | |||||||||||||||||| |||||||||||| | ||||||||||||| ||||| || || |    
T  8596 cctattgggggtaatccgcgtcgtcttagtttttgggatcctattgtgaatcgaattaaagctagacttatgggttggaatagccggtttctttcctttg 8497  T
Q  396 gtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    | || |||||||| ||  |||||||||||||||| |||||    
T  8496 gaggacgtttggttctgttaaaatctgtcttgacttctct 8457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 296 - 435
Target Start/End: Complemental strand, 45422512 - 45422373
Alignment:
Q  296 cctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcg 395  Q
    |||||||| ||||||| ||| ||| |||| |||||| | |||||||||||||| ||| |||||||||||| | ||||||||||||| ||||| || || |    
T  45422512 cctattgggggtaatccgcgtcgtcttagtttttgggatcctattgtgaatcgtattaaagctagacttatgggttggaatagccggtttctttcctttg 45422413  T
Q  396 gtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    | || |||||||| ||  |||||||||||||||| |||||    
T  45422412 gaggacgtttggttctattaaaatctgtcttgacttctct 45422373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 335 - 433
Target Start/End: Complemental strand, 13551535 - 13551437
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctct 433  Q
    |||||||||||||| ||| || |||||||  |  |||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||| ||||||||    
T  13551535 cctattgtgaatcgtattaaatctagactgtcaggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgtcctgacctct 13551437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 406
Target Start/End: Original strand, 8065482 - 8065519
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttg 406  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  8065482 gttggaatagcagatttctctctttcggtggccgtttg 8065519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 429
Target Start/End: Original strand, 25380571 - 25380675
Alignment:
Q  326 ttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctc-tttcggtggccgtttggtacttctaaaatctgtc 424  Q
    |||||| | |||||||||||||| ||| || |||||||  | ||||||| ||| || |||||||| ||| || ||||| ||||| ||||| |||||||||    
T  25380571 ttttgggaacctattgtgaatcgtattaaatctagactgtcaagttggattagtcgttttctctctttttggcggccgcttggttcttctcaaatctgtc 25380670  T
Q  425 ttgac 429  Q
    |||||    
T  25380671 ttgac 25380675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 437
Target Start/End: Original strand, 3649 - 3837
Alignment:
Q  249 ttttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcg 348  Q
    |||||||||| |||||||| ||| ||| |||  | ||||| ||||| || ||||| ||||| | ||| ||  |||| |||||| ||| ||||||| ||||    
T  3649 ttttgagttgcaaagtgggtaaggttcctttcttgtacttgggcttgccaattgggggtaacccgcgtcggcttagtttttgggaccatattgtgcatcg 3748  T
Q  349 aattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |||  || ||||||||||| ||||||||||| | ||||| || || || || | |||||||||| |||||||||||||||| |||||||    
T  3749 aatcaaatctagacttacgggttggaatagctggtttctttcctttggcggacatttggtacttttaaaatctgtcttgacttctctgc 3837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 321 - 435
Target Start/End: Complemental strand, 7453319 - 7453205
Alignment:
Q  321 ttagcttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatc 420  Q
    |||| |||||| | ||||||||||||||| || |||||||||||||| ||||||||||||| ||||| || || || || ||| |||| ||| |||||||    
T  7453319 ttagtttttgggatcctattgtgaatcgagttaaagctagacttacgggttggaatagccggtttctttcctttggaggacgtctggttcttttaaaatc 7453220  T
Q  421 tgtcttgacctctct 435  Q
    ||||||||| |||||    
T  7453219 tgtcttgacttctct 7453205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 251 - 420
Target Start/End: Complemental strand, 23943124 - 23942955
Alignment:
Q  251 ttgagttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgt-tttagcttttggaaccctattgtgaatcga 349  Q
    ||||||||||||||||| || ||||||||| | ||| ||||| | ||||| || ||||||| |||| || ||||| ||| ||||||  || |||||||||    
T  23943124 ttgagttgtaaagtgggaaaaattcattttatgtacctaggcctgcctatcggtggtaatccgcggagtctttagttttgggaacca-atcgtgaatcga 23943026  T
Q  350 attcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatc 420  Q
    ||| || ||||| |  || ||||||||||| |||||||||||||||||||||| ||| | ||||| |||||    
T  23943025 attaaatctagattgtcgggttggaatagcagatttctctctttcggtggccgcttgatccttctcaaatc 23942955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 326 - 406
Target Start/End: Original strand, 43612363 - 43612443
Alignment:
Q  326 ttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttg 406  Q
    ||||||||||||||||||||||| ||| || ||||| |  || ||||||||||| | ||||| ||||||||||||||||||    
T  43612363 ttttggaaccctattgtgaatcgcattaaatctagattgtcgggttggaatagcaggtttctatctttcggtggccgtttg 43612443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 369 - 437
Target Start/End: Original strand, 16375324 - 16375392
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |||||||||| || ||||||||||| ||||| || ||||| || || ||||||||||||||||||||||    
T  16375324 gttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgtcttgacctctctgc 16375392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 4987286 - 4987352
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    |||||||||| || || || ||||| |||||||||||||| ||||| |||||||| |||||||||||    
T  4987286 gttggaatagtcgtttcctttcttttggtggccgtttggttcttctcaaatctgtgttgacctctct 4987352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 395 - 435
Target Start/End: Complemental strand, 12332741 - 12332701
Alignment:
Q  395 ggtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  12332741 ggtggccgtttggttcttctaaagtctgtcttgacctctct 12332701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 43611369 - 43611445
Alignment:
Q  326 ttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccg 402  Q
    |||||| |||||||||||||||  ||| || |||||||  || ||||||||||| | ||||| ||||||||||||||    
T  43611369 ttttgggaccctattgtgaatcacattaaatctagactatcgggttggaatagcaggtttctatctttcggtggccg 43611445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 437
Target Start/End: Original strand, 48072613 - 48072715
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||| ||| || |||||||  || |||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||||||    
T  48072613 cctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgtcttgacctctc 48072712  T
Q  435 tgc 437  Q
    |||    
T  48072713 tgc 48072715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 437
Target Start/End: Original strand, 32352499 - 32352601
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||| | ||| || |||||||  || |||||||||| || ||||||||||| ||||| || ||||| || || |||||||||||||||||||    
T  32352499 cctattgtgaattgtattaaatctagactgtcgggttggaatagtcggtttctctcttttggtggtcgcttggttctactcaaatctgtcttgacctctc 32352598  T
Q  435 tgc 437  Q
    |||    
T  32352599 tgc 32352601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 433
Target Start/End: Complemental strand, 5498039 - 5497941
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctct 433  Q
    |||||||||||||| ||| || |||||||  || |||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||| ||||||||    
T  5498039 cctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgtcctgacctct 5497941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 25504213 - 25504279
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctct 435  Q
    |||||||||| || || |||||||| |||||||||||||| ||||| |||||||| |||||||||||    
T  25504213 gttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgtgttgacctctct 25504279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 408
Target Start/End: Complemental strand, 20796694 - 20796540
Alignment:
Q  254 agttgtaaagtggggaagattcattttgtttacttaggcttacctattggcggtaatctgcggcgttttagcttttggaaccctattgtgaatcgaattc 353  Q
    |||||||||||||| ||||||| |||  | ||| | || |||||||| || ||||||| | | ||| ||   |||||| ||||| |||||||| |||||     
T  20796694 agttgtaaagtgggcaagattcctttcatgtaccttggtttacctatagggggtaatccgtgtcgtctttcattttgggaccctgttgtgaatagaatta 20796595  T
Q  354 aagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggt 408  Q
    || ||||| |  |  |||||||||| ||||||||||| |||||||| || |||||    
T  20796594 aatctagattgtcaggttggaatagtcgatttctctcgttcggtggtcgcttggt 20796540  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 335 - 437
Target Start/End: Complemental strand, 15674785 - 15674683
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctc 434  Q
    |||||||||||||| ||| || |||||||  || |||||||||| || ||||||||||| ||||| || | ||| || || |||||||||||||||||||    
T  15674785 cctattgtgaatcgtattaaatctagactgtcgggttggaatagacggtttctctcttttggtggtcgctgggttctactcaaatctgtcttgacctctc 15674686  T
Q  435 tgc 437  Q
    |||    
T  15674685 tgc 15674683  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 369 - 437
Target Start/End: Complemental strand, 33640836 - 33640768
Alignment:
Q  369 gttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctctctgc 437  Q
    |||||||||| || || |||||||| |||||||||||||| ||||| |||||||| |||||||||||||    
T  33640836 gttggaatagtcgtttcctctcttttggtggccgtttggttcttctcaaatctgtgttgacctctctgc 33640768  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 433
Target Start/End: Complemental strand, 26206286 - 26206188
Alignment:
Q  335 cctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtcttgacctct 433  Q
    |||||||||||||| ||| || |||||||  || |||||||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||| ||||||||    
T  26206286 cctattgtgaatcgtattaaatctagactgtcgggttggaatagtcggtttctatcttttggtggtcgcttggttcttctcaaatctgtcctgacctct 26206188  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 435
Target Start/End: Complemental strand, 11469529 - 11469420
Alignment:
Q  326 ttttggaaccctattgtgaatcgaattcaagctagacttacgagttggaatagccgatttctctctttcggtggccgtttggtacttctaaaatctgtct 425  Q
    |||||| |||| ||||||||||||||| || |||||||  || | ||||||||||  |||||||| || |||||| | ||| | ||||||||||| |||     
T  11469529 ttttgggacccgattgtgaatcgaattaaatctagactgtcggggtggaatagcctgtttctctcatttggtggctgcttgattcttctaaaatcagtcc 11469430  T
Q  426 tgacctctct 435  Q
    |||| |||||    
T  11469429 tgacttctct 11469420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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