View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_4 (Length: 698)
Name: NF21193_high_4
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 583; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 27 - 682
Target Start/End: Original strand, 11689400 - 11690055
Alignment:
| Q |
27 |
tgtgataagctatgaaattgcagcacggccaaaccacaagagatatgtttataataactactcggtaaaaatggagccatcatgaacacattgattgaat |
126 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11689400 |
tgtgaaaagctatgaaattgcagcacggccaaaccacaaaagatatgtttataataactactcggtaaaaatggatccatcatgaacacattgattgaac |
11689499 |
T |
|
| Q |
127 |
cgaacacataaatcaaccaatgtctttaaccattatgtatggttaaacctactagaaactgtttagccgttgaagagtacacatgcaaataaaattaatg |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689500 |
cgaacacataaatcaaccaatgtctttaaccattatgtatggttaaacctactagaaactgtttagccgttgaagagtacacatgcaaataaaattaatg |
11689599 |
T |
|
| Q |
227 |
tcgtaaaggaaatcgagttgaaagaatacctggccatctgctattatcaccaaaacatggtactgacccccactctgctcaacaattgtcatggccattt |
326 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689600 |
tcgtaaaggaaattgagttgaaagaatacctggccatctgctattatcaccaaaacatggtactgacccccactctgctcaacaattgtcatggccattt |
11689699 |
T |
|
| Q |
327 |
caactattggcccaaatgaggtaggacctgaaaatagtaagcaccaatgttcttttaaccatgacatgaataagtagaatataccgaggaacaagannnn |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689700 |
caactattggcccaaatgaggtaggacctgaaaatagtaagcaccaatgttcttttaaccatgacatgaataagtagaatataccgaggaacaagatttt |
11689799 |
T |
|
| Q |
427 |
nnngtgaaaggtaacctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaa |
526 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689800 |
tttgtgaaaggtaacctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaa |
11689899 |
T |
|
| Q |
527 |
actgaatacatcttgatcatgcgttgatgctgccacaatatcacataactcttactaccatctctaaaatttggaaagaataaactctacgatgttaagt |
626 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||| || |
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| T |
11689900 |
actgaatacatcttgatcatgcgttgatgctgccacaatatcacataatttttactaccaactctaaactttggaaagaataaactctacgatgttacgt |
11689999 |
T |
|
| Q |
627 |
tataggaagtttaggagatacctaccgtctccaaatccaaaacagggtatcaagtt |
682 |
Q |
| |
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|||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11690000 |
tatatgaagtttatgagatacctaccgtctccaaatccaaaacaaggtatcaagtt |
11690055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 441 - 555
Target Start/End: Complemental strand, 30958526 - 30958412
Alignment:
| Q |
441 |
cctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacatctt |
540 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||| ||||| |||| ||| || |||| |
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| T |
30958526 |
cctgcaagtcgaatattaggaacaatttccctataccgactcaaaacttcttcaaatccattgcaaagtctttcatccggatacaaaccgaagacttctt |
30958427 |
T |
|
| Q |
541 |
gatcatgcgttgatg |
555 |
Q |
| |
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||||||| ||||||| |
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| T |
30958426 |
gatcatgtgttgatg |
30958412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 438 - 560
Target Start/End: Complemental strand, 30950826 - 30950704
Alignment:
| Q |
438 |
taacctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacat |
537 |
Q |
| |
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||||||||| || ||| || |||| |||||||||||||||||||| | |||||| |||||||||||| ||| | || |||||||||| || |||| |
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| T |
30950826 |
taacctgcaggttgaatattaggacgaatttccctataccgactcaaaatttcttcatgtccattgcaaaatctttcgtctcgatagaaactaaagacat |
30950727 |
T |
|
| Q |
538 |
cttgatcatgcgttgatgctgcc |
560 |
Q |
| |
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| |||||| |||||||||||| |
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| T |
30950726 |
cgtgatcacttgttgatgctgcc |
30950704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 440 - 571
Target Start/End: Complemental strand, 7473361 - 7473230
Alignment:
| Q |
440 |
acctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacatct |
539 |
Q |
| |
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|||||||||| || || |||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||| |||||||||||||| |||||| |
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| T |
7473361 |
acctgcaagtttaatattaggaacaatttccctataccgactcaaaacttcttcaaatccattgcaaattctttcatctggatagaaactgaagacatct |
7473262 |
T |
|
| Q |
540 |
tgatcatgcgttgatgctgccacaatatcaca |
571 |
Q |
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|||||||| ||||||||||||| ||||||||| |
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| T |
7473261 |
tgatcatgtgttgatgctgccataatatcaca |
7473230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 249 - 357
Target Start/End: Complemental strand, 7473620 - 7473512
Alignment:
| Q |
249 |
agaatacctggccatctgctattatcaccaaaacatggtactgacccccactctgctcaacaattgtcatggccatttcaactattggcccaaatgaggt |
348 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||| || || ||||||| || |
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| T |
7473620 |
agaatacctggccatcagcaattatcaccaaaacatggtattggcctccactctgctcaacaattgtcatggccgtttcaacaatgggtgcaaatgatgt |
7473521 |
T |
|
| Q |
349 |
aggacctga |
357 |
Q |
| |
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||| ||||| |
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| T |
7473520 |
agggcctga |
7473512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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