View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_5 (Length: 697)
Name: NF21193_high_5
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 177 - 681
Target Start/End: Original strand, 11689551 - 11690055
Alignment:
| Q |
177 |
ctagaaactgtttagccgttgaagagtacacatgcaaataaaattaatgtcgtaaaggaaatcgagttgaaagaatacctggccatctgctattatcacc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11689551 |
ctagaaactgtttagccgttgaagagtacacatgcaaataaaattaatgtcgtaaaggaaattgagttgaaagaatacctggccatctgctattatcacc |
11689650 |
T |
|
| Q |
277 |
aaaacatggtactgacccccactctgctcaacaattgtcatggccatttcaactattggcccaaatgaggtaggacctgaaaatagtaagcaccaatgtt |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689651 |
aaaacatggtactgacccccactctgctcaacaattgtcatggccatttcaactattggcccaaatgaggtaggacctgaaaatagtaagcaccaatgtt |
11689750 |
T |
|
| Q |
377 |
cttttaaccatgacatgaataagtagaatataccgaggaacaagannnnnnngtgaaaggtaacctgcaagtcgaagatgaggaacaatttccctatacc |
476 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11689751 |
cttttaaccatgacatgaataagtagaatataccgaggaacaagatttttttgtgaaaggtaacctgcaagtcgaagatgaggaacaatttccctatacc |
11689850 |
T |
|
| Q |
477 |
gactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacatcttgatcatgcgttgatgctgccacaatatcacataactc |
576 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11689851 |
gactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacatcttgatcatgcgttgatgctgccacaatatcacataattt |
11689950 |
T |
|
| Q |
577 |
ttactaccatctctaaaatttggaaagaataaactctacgatgttaagttataggaagtttaggagatacctaccgtctccaaatccaaaacagggtatc |
676 |
Q |
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| T |
11689951 |
ttactaccaactctaaactttggaaagaataaactctacgatgttacgttatatgaagtttatgagatacctaccgtctccaaatccaaaacaaggtatc |
11690050 |
T |
|
| Q |
677 |
aagtt |
681 |
Q |
| |
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||||| |
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| T |
11690051 |
aagtt |
11690055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 11689382 - 11689220
Alignment:
| Q |
18 |
tgtctttcgtatggagttgctattattttctaccatgaagtgtaaacattatactcacccgatatcaacaacggtcgatgcaggtaacaagaagtgttga |
117 |
Q |
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|||||||||||||||||||||| ||| || || ||| ||||||||||||||||||||| ||| ||| |||| |||||||| ||||||||||||||||||| |
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| T |
11689382 |
tgtctttcgtatggagttgctagtatgttttatcattaagtgtaaacattatactcactcgacatctacaatggtcgatgtaggtaacaagaagtgttga |
11689283 |
T |
|
| Q |
118 |
cactgaatatggaaagctaagtccacaggaacagaagactatggacgccattgtccgggctag |
180 |
Q |
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|
| T |
11689282 |
cactgagtatggaaaactaagtccacaggaacagaagactatggatgccattgtccgggctag |
11689220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 440 - 554
Target Start/End: Complemental strand, 30958526 - 30958412
Alignment:
| Q |
440 |
cctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacatctt |
539 |
Q |
| |
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||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||| ||||| |||| ||| || |||| |
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| T |
30958526 |
cctgcaagtcgaatattaggaacaatttccctataccgactcaaaacttcttcaaatccattgcaaagtctttcatccggatacaaaccgaagacttctt |
30958427 |
T |
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| Q |
540 |
gatcatgcgttgatg |
554 |
Q |
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||||||| ||||||| |
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| T |
30958426 |
gatcatgtgttgatg |
30958412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 437 - 559
Target Start/End: Complemental strand, 30950826 - 30950704
Alignment:
| Q |
437 |
taacctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacat |
536 |
Q |
| |
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||||||||| || ||| || |||| |||||||||||||||||||| | |||||| |||||||||||| ||| | || |||||||||| || |||| |
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| T |
30950826 |
taacctgcaggttgaatattaggacgaatttccctataccgactcaaaatttcttcatgtccattgcaaaatctttcgtctcgatagaaactaaagacat |
30950727 |
T |
|
| Q |
537 |
cttgatcatgcgttgatgctgcc |
559 |
Q |
| |
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| |||||| |||||||||||| |
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|
| T |
30950726 |
cgtgatcacttgttgatgctgcc |
30950704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 439 - 570
Target Start/End: Complemental strand, 7473361 - 7473230
Alignment:
| Q |
439 |
acctgcaagtcgaagatgaggaacaatttccctataccgactcagcacgtcttcaaatccattgcaaaaacttccatcaggatagaaactgaatacatct |
538 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||| || ||||||||||||||||||| ||| |||| |||||||||||||| |||||| |
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| T |
7473361 |
acctgcaagtttaatattaggaacaatttccctataccgactcaaaacttcttcaaatccattgcaaattctttcatctggatagaaactgaagacatct |
7473262 |
T |
|
| Q |
539 |
tgatcatgcgttgatgctgccacaatatcaca |
570 |
Q |
| |
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|||||||| ||||||||||||| ||||||||| |
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|
| T |
7473261 |
tgatcatgtgttgatgctgccataatatcaca |
7473230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 7473620 - 7473512
Alignment:
| Q |
248 |
agaatacctggccatctgctattatcaccaaaacatggtactgacccccactctgctcaacaattgtcatggccatttcaactattggcccaaatgaggt |
347 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||| || || ||||||| || |
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| T |
7473620 |
agaatacctggccatcagcaattatcaccaaaacatggtattggcctccactctgctcaacaattgtcatggccgtttcaacaatgggtgcaaatgatgt |
7473521 |
T |
|
| Q |
348 |
aggacctga |
356 |
Q |
| |
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||| ||||| |
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|
| T |
7473520 |
agggcctga |
7473512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 7473963 - 7474039
Alignment:
| Q |
96 |
tgcaggtaacaagaagtgttgacactgaatatggaaagctaagtccacaggaacagaagactatggacgccattgtc |
172 |
Q |
| |
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||||||||||||||||| ||||||||||| |||||| ||| ||||||||||| ||||||||| |||| ||||||||| |
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| T |
7473963 |
tgcaggtaacaagaagtattgacactgaacatggaaggctcagtccacaggagcagaagactgtggatgccattgtc |
7474039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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