View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_55 (Length: 219)
Name: NF21193_high_55
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_55 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 219
Target Start/End: Complemental strand, 52141858 - 52141647
Alignment:
| Q |
8 |
ccaagaaaattgtatttgcatagtagcaaaaatcctgaaacaattggaagcatttaatcaacaataacataatacattattaaaaagtagaaatatgaga |
107 |
Q |
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| T |
52141858 |
ccaagaaaattgtatttgcatagtagcaaaaatcctgaaacaattggaagcatttaatcaacaataacatagtacattattaaaaagtagaaatatgaga |
52141759 |
T |
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| Q |
108 |
tatgttgctgtgcttgcatcgggaattattaccagtaagtagtaatgccatttcttgaacttatagtaaatccaacgaagaggaacaaagaagacgtaga |
207 |
Q |
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| T |
52141758 |
tatgttgctgtgcttgcattgggaattattaccagtaagtagtaatgccatttcttgaacttatagtaaatccaacgaagaggaacaaagaagacgtaga |
52141659 |
T |
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| Q |
208 |
acaaacaataca |
219 |
Q |
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| T |
52141658 |
acaaacaataca |
52141647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 147 - 219
Target Start/End: Original strand, 17808089 - 17808161
Alignment:
| Q |
147 |
tagtaatgccatttcttgaacttatagtaaatccaacgaagaggaacaaagaagacgtagaacaaacaataca |
219 |
Q |
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| T |
17808089 |
tagtaatgccatttcttgaatctatagtatatccaacgaagaggaacaaacacaaagtagaacaaacaataca |
17808161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 17807185 - 17807218
Alignment:
| Q |
16 |
attgtatttgcatagtagcaaaaatcctgaaaca |
49 |
Q |
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| T |
17807185 |
attgtattggcatagtagcaaaaatcctgaaaca |
17807218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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