View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_8 (Length: 642)
Name: NF21193_high_8
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 201 - 479
Target Start/End: Original strand, 50342459 - 50342736
Alignment:
| Q |
201 |
tttattaatttttctttggttgaataggtgattaggtcactaatttaacttgatatttgtttccaaactgtagttgagaatttattgaggcttgccccgg |
300 |
Q |
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| T |
50342459 |
tttattaatttttctttggttgaataggtgattaggtcactaatttaacttgatatttgtttccaaactgtagttgagattttgttgaggcttgccctgg |
50342558 |
T |
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| Q |
301 |
ctagactagaattctctgcaacggttacggttaccatccaaattgggtcgtgacaaagttgattgtttataagcttggatcgagaatttttggagggaag |
400 |
Q |
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| T |
50342559 |
ctagactagaattctctgcaccggttacggttaccatccaaattgggtcgtgacaaagttgattgtttataagcttgggtcaagaa-ttttggagggaag |
50342657 |
T |
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| Q |
401 |
gagggaataacttattttatttttaaaattaagaaaatcataaaatacttttgaaaaagctttgtagaataggctacca |
479 |
Q |
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| T |
50342658 |
gagggaataacttattttatttttaaaattaagaaaatcataaaatacttttgaaaaagctttgtagaataggctacca |
50342736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 497 - 642
Target Start/End: Original strand, 50342816 - 50342961
Alignment:
| Q |
497 |
atatattaattggaaccaggcatcaaagcacttattctaattataattattatatgtgacaatataattatttacatacgtaaatcaccaaagttgatag |
596 |
Q |
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| T |
50342816 |
atatattaattggaaccgtgcaacaaagcacttattctaattataattattatatgtgacaatataattatttacatacgtaaatcaccaaagttgatag |
50342915 |
T |
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| Q |
597 |
ctccattagcattgccttcagtgaagctagtttgattacttagacc |
642 |
Q |
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| T |
50342916 |
ctccattagcattgccttcagtgaagccagtttgattacttagacc |
50342961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 50342370 - 50342423
Alignment:
| Q |
152 |
aaccctgagaa-tgaaaaatgaggatctttgaaattatctgttatgtcttttta |
204 |
Q |
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| T |
50342370 |
aaccctgagaaatgaaaaatgaggatctttgaaattatctgttatgtcttttta |
50342423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 506
Target Start/End: Original strand, 50342771 - 50342800
Alignment:
| Q |
477 |
ccatcatatcatatcatatcatatattaat |
506 |
Q |
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| T |
50342771 |
ccatcatatcatatcatatcatatattaat |
50342800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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