View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_high_9 (Length: 610)
Name: NF21193_high_9
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Original strand, 27174632 - 27175160
Alignment:
| Q |
1 |
aagaatatgaagtggagtcattgccggaaaatccaatagcggctcaaatgaagattcacaaagaaaagaagacaaggcaagccaaagttgaatcatgtct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
27174632 |
aagaatatgaagtggagtcattgccggaaaatccaatggcggctcaaatgaagattcataaagaaaagaagacaaggcaggccaaagttgaatcatgtct |
27174731 |
T |
|
| Q |
101 |
attcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaaataagaatataagaatatgatg |
200 |
Q |
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| T |
27174732 |
attcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaaataa--------gaatatgatg |
27174823 |
T |
|
| Q |
201 |
gaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcagaaaccataaaagagtactcagataa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27174824 |
gaaattaaagaaccaaaaacatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcagaaaccataaaagagtactcagataa |
27174923 |
T |
|
| Q |
301 |
gttgctgattgttgttaacaaggtgagataacttggtaatg---atttttctgatgaaataattgtgcaaaaaactctggtttctatgcctgagagatat |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27174924 |
gttgctgattgttgttaacaaggtgagataacttggtaatgattatttttctgatgaaagaattgtgcaaaaaactctggtttctatgcctgagag---- |
27175019 |
T |
|
| Q |
398 |
atatgaatcaaaaatttcttcattagaagaaacaaacgatttatcgctaatttccttggtataattggtgaatgcattccaggcacaagaacaaaggaga |
497 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
27175020 |
atatgaatcaaaaatttcttcatttgaagaaacaaacgatttatcgctaatttccttggtataattggtgaatgcattccaggcacaagaac--agaaga |
27175117 |
T |
|
| Q |
498 |
atgatgagaggag-aaatgtccataaaatgttctttgtatgtg |
539 |
Q |
| |
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| T |
27175118 |
atgatgagaggagaaaatgtccataaaatgttcattgtatgtg |
27175160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 27231437 - 27231712
Alignment:
| Q |
1 |
aagaatatgaagtggagtcattgccggaaaatccaatagcggctcaaatgaagattcacaaagaaaagaagacaaggcaagccaaagttgaatcatgtct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
27231437 |
aagaatatgaagtggagtcattgccggaaaatccaatggcggctcaaatgaagattcataaagaaaagaagacaaggcaggccaaagttgaatcatgtct |
27231536 |
T |
|
| Q |
101 |
attcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaaataagaatataagaatatgatg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27231537 |
attcaatgcggtgtcaagcacaatatttacaagaatcatgaacttgaaatccgcaaaagacatctgagactacatcaa--------ataagaatatgatg |
27231628 |
T |
|
| Q |
201 |
gaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcagaaaccataa |
284 |
Q |
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| T |
27231629 |
gaaattaaagaaccaaaaacatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcagaaaccataa |
27231712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 189 - 488
Target Start/End: Original strand, 17532647 - 17532941
Alignment:
| Q |
189 |
aagaatatgatggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcagaaaccataaaaga |
288 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||| | ||||| | |||||| |||||||||||||| |||||||||| | | | |||||||||||| |
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| T |
17532647 |
aagaatatgagggaaatgaaagaaccaaaaacatgcaaa-actcaacctgattcaagagttcgagatgctaaaaatgaaggagacggtaaccataaaaga |
17532745 |
T |
|
| Q |
289 |
gtactcagataagttgctgattgttgttaacaaggtgagataacttggtaatgatttttctgatgaaataattgtgcaaaaaactctggtttctatgcct |
388 |
Q |
| |
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||| || |||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| | |||||||| ||||| |
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| T |
17532746 |
gtatgcaaataagttgttgggcgttgttaacaaggtgagattacttggtaatgatttttctgatgaaagaattgcttaaatttttttggtttctgtgcct |
17532845 |
T |
|
| Q |
389 |
gagagatatatatgaatcaaaaatttcttcattagaagaaacaaacgatttatcgctaatttccttggtataattggtgaatgcattccaggcacaagaa |
488 |
Q |
| |
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|||| |||||| ||||||||||||| ||||||||||||||| ||||| || |||||||| ||| ||||| |||||||||| |||||||||||| |
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| T |
17532846 |
tagag----atatgagtcaaaaatttctttattagaagaaacaaaagatttgtctagcatttcctttgtaaaattgatgaatgcattacaggcacaagaa |
17532941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 189 - 362
Target Start/End: Complemental strand, 14805755 - 14805583
Alignment:
| Q |
189 |
aagaatatgatggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcagaaaccataaaaga |
288 |
Q |
| |
|
||||||| || |||||| |||||||||||| ||||| | ||||| | |||||| |||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
14805755 |
aagaatacgagggaaatgaaagaaccaaaaacatgcaaa-actcaacctgattcaagagttcgagatgctaaaaatgaaggaggcggaaaccataaaatt |
14805657 |
T |
|
| Q |
289 |
gtactcagataagttgctgattgttgttaacaaggtgagataacttggtaatgatttttctgatgaaataattg |
362 |
Q |
| |
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|| || |||||||| || | ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
14805656 |
gtgtgcaaataagttgttgggcgctgttaacaaggtgagattacttggtaatgatttttatgatgaaagaattg |
14805583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 189 - 362
Target Start/End: Complemental strand, 15252749 - 15252577
Alignment:
| Q |
189 |
aagaatatgatggaaattaaagaaccaaaaccatgcggatactcaccttgattcgggagttcgagatgctgaaaatgaaggtggcagaaaccataaaaga |
288 |
Q |
| |
|
||||||| || |||||| |||||||||||| ||||| | ||||| | |||||| |||||||||||||| |||||||||| ||| |||||||||||| |
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| T |
15252749 |
aagaatacgagggaaatgaaagaaccaaaaacatgcaaa-actcaacctgattcaagagttcgagatgctaaaaatgaaggaggcggaaaccataaaatt |
15252651 |
T |
|
| Q |
289 |
gtactcagataagttgctgattgttgttaacaaggtgagataacttggtaatgatttttctgatgaaataattg |
362 |
Q |
| |
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|| || |||||||| || | ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
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| T |
15252650 |
gtgtgcaaataagttgttgggcgctgttaacaaggtgagattacttggtaatgatttttatgatgaaagaattg |
15252577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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