View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_11 (Length: 600)
Name: NF21193_low_11
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 3961087 - 3960621
Alignment:
| Q |
20 |
gaatcggctaaccatctttttatccattgtgaaaaggtgattgatatttggtataaggtgattatgtggtc-gaaatctgtttcataaatccacctaact |
118 |
Q |
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| T |
3961087 |
gaatcggctaaccatcattttatccattgtgaaaaggtgattgatatttggtataaggtgattatgtggttagaaatctgtttcatatatcctcctaact |
3960988 |
T |
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| Q |
119 |
tg------cattgggagtgttgaagtttagaaggtagaaacaagaggatccggaagggtttgcatcttatttggcatgcaacgatttcggccatttggca |
212 |
Q |
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| T |
3960987 |
tgtttgtgcattgggagtgttggagtttaaaaggtagaaacaagaggatccagaaggatttgcgtcttatttggcatgcaatgatttgggccatttggca |
3960888 |
T |
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| Q |
213 |
aacgaggaatcaaatcatttttaagaacgaggttagtgcagtggaagatattgcggaggcggtgaaagttttatcttagcggtggagtttggagaggttg |
312 |
Q |
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| T |
3960887 |
agcgagaaatcaaatcatttttaagaacgaggttagtgcggtggaagatattgtggaggcggtgaaagttttatcttagcggtggagtttggagaggttg |
3960788 |
T |
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| Q |
313 |
aacatcttgacttgtttgttctacgagtcagtggatttggaatccgaaggattgccttttgaggtaataggggttgctgtctgggccctggggtctgccg |
412 |
Q |
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| T |
3960787 |
aacatcctgacttgtttgtgctacg----agtggatgtggaatctgaaggattgccttttgaggtaataggagtcgcggt-------ctggggttttcct |
3960699 |
T |
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| Q |
413 |
tgatttggttttaggactgtttcattagtccgttgggagctctgcaagcggtttgggtttttgccttgctgctgtctt |
490 |
Q |
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| T |
3960698 |
tgattcggttttgggactatttcattagtccgttgggagctctgcaagcggttcgggtttttgccttgctgctatctt |
3960621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 402 - 488
Target Start/End: Complemental strand, 3960316 - 3960230
Alignment:
| Q |
402 |
ggggtctgccgtgatttggttttaggactgtttcattagtccgttgggagctctgcaagcggtttgggtttttgccttgctgctgtc |
488 |
Q |
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| T |
3960316 |
ggggtttgacgtgattcggttttgggactgtttcattagtcagttgggagctctgccagcggctcgggtttctgccttgctgctgtc |
3960230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 478 - 520
Target Start/End: Complemental strand, 3960604 - 3960562
Alignment:
| Q |
478 |
ttgctgctgtcttagtttgcgcagagctgagcgcgttttttcc |
520 |
Q |
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| T |
3960604 |
ttgctgctgtcttagtttgcgcagagctgagcgcgttttttcc |
3960562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 9359539 - 9359434
Alignment:
| Q |
119 |
tgcattgggagtgttgaagtttagaaggtagaaacaagaggatccggaagggtttgcatcttatttggcatgcaacgatttcggccatttggcaaacgag |
218 |
Q |
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| T |
9359539 |
tgcattgggcatgttggagtattgaagggagaaacaagaagattcgcaaggggttgtggattatttggcatgcaactatttgggctatttggcaagctag |
9359440 |
T |
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| Q |
219 |
gaatca |
224 |
Q |
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| T |
9359439 |
gaatca |
9359434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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