View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21193_low_14 (Length: 548)
Name: NF21193_low_14
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 469; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Complemental strand, 1891237 - 1890717
Alignment:
| Q |
19 |
aaggataagaccattttggcattaccctattgctccaagaagcacacttttcaatattgtggagaaacttagtggtggaaccaatctgcaaacagacatc |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1891237 |
aaggataagatcattttggcattaccctattgctccaagaagcacacttttcaatattgtggagaaacttagtggtggaagcaatctgcaaacagacatc |
1891138 |
T |
|
| Q |
119 |
ataagaaaaaacaagaagaaattagtctgtataaatactaagtgcgtgtttgaaatcgcttatagtttgacaaaatcacgaaggcactataacttttgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
1891137 |
ataagaaaaaacaagaagaaattagtctgtataaatactaagtgcgtgtttgaaatcgcatatagtttgacaaaatcacgaagatactgtaacttttgtt |
1891038 |
T |
|
| Q |
219 |
aagtgaaatgtaattgctaagtgtaagtttgaaatgacgatcagtttccaaaactgttttttgtcaaaatctcgatggtacagtgtgatgaacctgacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1891037 |
aagtgaaatgtaattgctaagtgtaagtttcaaatcacgatgagtttccaaaactgttttttgtcaaaatcttgatggtacagtgtgatgaacctgacaa |
1890938 |
T |
|
| Q |
319 |
atttaccgtcaatctaaacatgtactaagttgttatatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctaa-aaaagtgatagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1890937 |
atttaccgtcaatctaaacatgtactaagttgttgtatacatatgttgttctaacaccgtgattctgacaaacttaccttcttctaaaaaaagtgatagg |
1890838 |
T |
|
| Q |
418 |
aaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1890837 |
aaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatt |
1890738 |
T |
|
| Q |
518 |
tcaatagtttcctgtcctatg |
538 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1890737 |
tcaatagtttcctgtcctatg |
1890717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 367 - 521
Target Start/End: Complemental strand, 1884245 - 1884090
Alignment:
| Q |
367 |
ttctaacaccgtgattctgacaaacttaccttcttctaaaaaa-gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatg |
465 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||| || ||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
1884245 |
ttctaacgtcgtgattctgtcaaacttaccttcttctaaaaaaagtgataggaaggagaaaagaagttgcaacagcataagcataggcaacaaagacatg |
1884146 |
T |
|
| Q |
466 |
attgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccatttcaa |
521 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
1884145 |
attgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaa |
1884090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 410 - 538
Target Start/End: Complemental strand, 1895695 - 1895567
Alignment:
| Q |
410 |
gtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagta |
509 |
Q |
| |
|
|||| |||||| |||| || |||||||| |||||||| ||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1895695 |
gtgacaggaagaagaacagaagtaccaacagcataagaataagcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagta |
1895596 |
T |
|
| Q |
510 |
aagccatttcaatagtttcctgtcctatg |
538 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1895595 |
aagccatttcaatagtttcctgtcctatg |
1895567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 404 - 523
Target Start/End: Complemental strand, 1911157 - 1911038
Alignment:
| Q |
404 |
aaaaaagtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaag |
503 |
Q |
| |
|
|||| ||||| ||| || |||| || |||||||| |||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1911157 |
aaaagagtgacagggagaagaacagaagtaccaacagcataagcataagcaataaagacatgattgttcatcccttgaagtgtagctgctttgaacaaag |
1911058 |
T |
|
| Q |
504 |
tgagtaaagccatttcaata |
523 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
1911057 |
tgagtaaagccatgtcaata |
1911038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 404 - 515
Target Start/End: Complemental strand, 1878195 - 1878084
Alignment:
| Q |
404 |
aaaaaagtgataggaaggagaatagcagtaccaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaag |
503 |
Q |
| |
|
||||| |||||||||||||||| || |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||| |
|
|
| T |
1878195 |
aaaaaggtgataggaaggagaacagaagtaccaacagcataagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaa |
1878096 |
T |
|
| Q |
504 |
tgagtaaagcca |
515 |
Q |
| |
|
||| |||||||| |
|
|
| T |
1878095 |
tgactaaagcca |
1878084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 433 - 516
Target Start/End: Complemental strand, 1902083 - 1902000
Alignment:
| Q |
433 |
accaatagcataagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
516 |
Q |
| |
|
||||| |||||||||||| |||| ||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
1902083 |
accaacagcataagcataagcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccat |
1902000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 1905858 - 1905803
Alignment:
| Q |
32 |
ttttggcattaccctattgctccaagaagcacacttttcaatattgtggagaaact |
87 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| ||||| | |||||||| |
|
|
| T |
1905858 |
ttttgccattaccctattgcaccaagaagcacacttttacatattatagagaaact |
1905803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 1884432 - 1884378
Alignment:
| Q |
39 |
attaccctattgctccaagaagcacacttttcaatattgtggagaaacttagtgg |
93 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||| |||||||||| ||||| |
|
|
| T |
1884432 |
attaccctatcgctccaagaagcacaattttgcatattatggagaaactgagtgg |
1884378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Complemental strand, 1896003 - 1895942
Alignment:
| Q |
32 |
ttttggcattaccctattgctccaagaagcacacttttcaatattgtggagaaacttagtgg |
93 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| |||| ||| | |||||||||| ||||| |
|
|
| T |
1896003 |
ttttggcattaccctattgcaccaagaagtacaattttgcatactatggagaaactgagtgg |
1895942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 516
Target Start/End: Complemental strand, 11537577 - 11537528
Alignment:
| Q |
467 |
ttgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagccat |
516 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| ||| |||| |
|
|
| T |
11537577 |
ttgttcatcccttgcagtggtgctgctttgaacaaagtgagcaaacccat |
11537528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University