View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_15 (Length: 548)
Name: NF21193_low_15
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 43 - 534
Target Start/End: Complemental strand, 660625 - 660138
Alignment:
| Q |
43 |
tcatattacaatggtttacttgtttagaccttgattatctgtcatgaatttaagtatgaatatatttttgcaaaattaatatatgttggaagatttgtta |
142 |
Q |
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| T |
660625 |
tcatattacaatggtttacttgtttagaccttgattatctgtcatgaatttaagtatgaatatatttttgcaaaattaatatatgttggaagatttgcta |
660526 |
T |
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| Q |
143 |
tagttctgtttatcccccatgttacgtgtggtgcaggcttctattcatggcggcgcgattggaggttgttgccgcacaattcaacgttggcaagctcacg |
242 |
Q |
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| T |
660525 |
tagttctgtttatcccccatgttacgtgtggtgcaggcttctattcatggcggcgcgattggaggttgttg------------------gcaagctcacg |
660444 |
T |
|
| Q |
243 |
accaaacatctctaattagattaatgaacannnnnnnnn----ctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaa |
338 |
Q |
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| T |
660443 |
accaaacatctctaattagattaatgaacatttttttttttttctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaa |
660344 |
T |
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| Q |
339 |
ctcagatttcttgaactggtttttcatttatcttggattcgtgctaatatatgtggagaaaatacaactcaaataaagccctaatgcacattgcacatca |
438 |
Q |
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| T |
660343 |
ctcagatttcttgaactagtttttcatttatcttggattcatgctaatatatgtggagaaaatacaactcaaataaagccctaatgcacattgcacatca |
660244 |
T |
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| Q |
439 |
gtgtataaaattttgactatagatatgattaggttgttgccaagtcaagcaaaagctat----------gctttggtgcaaaaacaaacactgatacaat |
528 |
Q |
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| T |
660243 |
gtgtataaaattttgactatagatatgattaggttgttgccaagtcaagcaaaagctatgcttccctttgctttggtgcaaaaacaaacactgatacaat |
660144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 282 - 441
Target Start/End: Original strand, 22070977 - 22071131
Alignment:
| Q |
282 |
ctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtg |
381 |
Q |
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|||||||||||||||||||| |||| | ||| | |||||||||||||| |||||||||| |||| || |||||||||| ||| ||||||||||| || |
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| T |
22070977 |
ctctttcttgcattttgtat--tattaaacccttgataggaagttatttgatttcaactcaaattttctgtactggtttttaattgatcttggattcatg |
22071074 |
T |
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| Q |
382 |
ctaatatatgtggagaaaatacaactcaaataaagccctaatgcacattgcacatcagtg |
441 |
Q |
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| T |
22071075 |
ctaatatatgtggagaaaatacaacttaaatatggccctaatgca---tgcacatcagtg |
22071131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 22064987 - 22065146
Alignment:
| Q |
252 |
ctctaattagattaatgaacannnnnnnnnctctttcttgcattttgtatattattcatgcctaggtaggaagttatttggtttcaactcagatttcttg |
351 |
Q |
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| T |
22064987 |
ctctaattagattaatgaacattctttttgctctttcttgcattttgtaa--tatttaagcatagtaaggaaattattcgatttcaactcaaatttcttg |
22065084 |
T |
|
| Q |
352 |
aactggtttttcatttatcttggattcgtgctaatatatgtggagaaaatacaactcaaata |
413 |
Q |
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| T |
22065085 |
aactagtttttagttgatcttggattcatgtttacatatgtggagaaaatacaacttaaata |
22065146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 472 - 523
Target Start/End: Original strand, 22071542 - 22071593
Alignment:
| Q |
472 |
ttgttgccaagtcaagcaaaagctatgctttggtgcaaaaacaaacactgat |
523 |
Q |
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| T |
22071542 |
ttgttgccaagtcgagctgaagctatgctttggtgcaaaaacaaacactgat |
22071593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 22070781 - 22070827
Alignment:
| Q |
66 |
ttagaccttgattatctgtcatgaatttaagtatgaatatatttttg |
112 |
Q |
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| T |
22070781 |
ttagagcttgattatctgtcctaaatttaagtatgaatatatttttg |
22070827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 426
Target Start/End: Original strand, 22082314 - 22082416
Alignment:
| Q |
328 |
tttggtttcaactcagatttcttgaactggtttttcatttatcttggattcgtg----ctaatatatgtggagaaaatacaactcaaataaagccctaat |
423 |
Q |
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|||| |||||||||| |||| ||| |||||||||| ||| |||| ||||| | |||||||||||||||||||||||||| ||||| ||| |||| |
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| T |
22082314 |
tttgatttcaactcaaattttttgtactggtttttaattgatctatgattcatatatactaatatatgtggagaaaatacaacttaaatatggccgtaat |
22082413 |
T |
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| Q |
424 |
gca |
426 |
Q |
| |
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||| |
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| T |
22082414 |
gca |
22082416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 377
Target Start/End: Original strand, 15963235 - 15963311
Alignment:
| Q |
301 |
tattattcatgcctaggtaggaagttatttggtttcaactcagatttcttgaactggtttttcatttatcttggatt |
377 |
Q |
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||||||| ||||||| ||| | ||||||||||||||| |||| |||||| |||| |||||| ||| |||||||||| |
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| T |
15963235 |
tattatttatgcctaaatagaaggttatttggtttcaattcagttttcttaaacttgtttttaattcatcttggatt |
15963311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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