View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_18 (Length: 468)
Name: NF21193_low_18
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 139 - 461
Target Start/End: Original strand, 40992962 - 40993291
Alignment:
| Q |
139 |
tcttccaaattattgtgtcactgctgatattacttttagcccctttctataaactagtactagtatttaagcgcatatagtgcatcatttccttgtacaa |
238 |
Q |
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| T |
40992962 |
tcttccaaattattgtgtcactgctgatattacttttagcccctttctataaactagtactagtatttaagcgcatatagtgcatcatttccttgtacaa |
40993061 |
T |
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| Q |
239 |
tatctagcataactctaaagtagcaatatcac-------aatggaacttcacattcccaaaccatgctttatccttttaattctaacgacttccttgttt |
331 |
Q |
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| T |
40993062 |
tatctagcctaactctaaagtagcaatatcacaattcacaatggaacttcacattcccaaaccatgctttatccttttaattctaacgacttccttgttt |
40993161 |
T |
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| Q |
332 |
gcatcaactatcctagctgcaaactcaaacctattccgagaatacattggagctcaattcaaaggtgtcaaattttcagatgttcctataaacccaaatg |
431 |
Q |
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| T |
40993162 |
gcatcaactatcctagctgcaaactcaaacctattccgagaatacattggagctcaattcaaaggtgtcaaattttcagatgttcctataaacccaaatg |
40993261 |
T |
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| Q |
432 |
tcaatttccacttcattttatcctttgcta |
461 |
Q |
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| T |
40993262 |
tcaatttccacttcattttatcctttgcta |
40993291 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 29058675 - 29058760
Alignment:
| Q |
363 |
tattccgagaatacattggagctcaattcaaaggtgtcaaattttcagatgttcctataaacccaaatgtcaatttccacttcatt |
448 |
Q |
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| T |
29058675 |
tattcagagaatacattggagctgaatccaacaacatcaagttctcagatgttcctataaaccctaatgttgaattccacttcatt |
29058760 |
T |
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