View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_19 (Length: 462)
Name: NF21193_low_19
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 47624474 - 47624931
Alignment:
| Q |
1 |
agctagtgagtgctcgattgtttcacatttttctttgcttacnnnnnnnnntaacaagtgagtgcactattcatcggtcttcaaatgttaatcaagcttt |
100 |
Q |
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| T |
47624474 |
agctagtgagtgctcgattgtttcacacttttctttgcttacaaaaaaaaataacaagtgagtgctctattcatcggtcttcaaatgttaatcaagcttt |
47624573 |
T |
|
| Q |
101 |
gttaagccgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataatgcagtaactgata |
200 |
Q |
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| T |
47624574 |
gttaagctgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataatgcagtaactgata |
47624673 |
T |
|
| Q |
201 |
tatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgcttgtttttcaaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624674 |
tatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgcttgtttttcaaag |
47624773 |
T |
|
| Q |
301 |
catgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccattgagtaattttat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47624774 |
catgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccattgagcaattttat |
47624873 |
T |
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| Q |
401 |
cttcatatctttgacaagaacctgttgaaaaaggagaccagagagcacatgtataaac |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624874 |
cttcatatctttgacaagaacctgttgaaaaaggagaccagagagcacatgtataaac |
47624931 |
T |
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