View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_23 (Length: 446)
Name: NF21193_low_23
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 437
Target Start/End: Original strand, 32610096 - 32610509
Alignment:
| Q |
20 |
atcttattctaggaagaattctttaatttaagtaatatacttcatttaaacctcttnnnnnnntaatctgtcatttccctatgaggcttaatatttcagt |
119 |
Q |
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| T |
32610096 |
atcttataataggaagaactctttaatttgagtaatatatttcattttaacctcttaaattttt--tttgtcatttccatatgaggcttaatatttaagt |
32610193 |
T |
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| Q |
120 |
actccttgcaggtagatgtgttgctttgtctaaagtcgaatcagattctttgtaatcataaagttttaatttcaacggtgaaacaaatctgagctaaagg |
219 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32610194 |
actccttgcaggtacatgtgttgctttgtctaaagtcgaatcagattctttgtaatcataaagttttaatttcaacggtgaaacaaatctgagctaaagg |
32610293 |
T |
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| Q |
220 |
aaacgaatataataccccttgttaaaaataagattttgatatctgaaccacttagattcttttaatggataaaatcatgccagaatccatttccatctaa |
319 |
Q |
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| T |
32610294 |
aagcgaatataataccccttgtttaaaataagattttgatatctgaaccacttagattcttttaatggataaaatcatgccagaacccatttccatctaa |
32610393 |
T |
|
| Q |
320 |
aacatggacaaaccaatgttttggatatgtactaggtagcatagtttaattattttcaaataattactttttgtttttaagaattatgcttacaacttac |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
32610394 |
aacatggacaaaccaatgttttggatatgtactaggtagcatagtttaattattttcaaataattactttt--ttttttagaattatgcttacaacttac |
32610491 |
T |
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| Q |
420 |
tatttaatacagtattat |
437 |
Q |
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| T |
32610492 |
tatttaatacattattat |
32610509 |
T |
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Back To:
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 27092739 - 27092797
Alignment:
| Q |
17 |
cacatcttattctaggaagaattctttaatttaagtaatatacttcatttaaacctctt |
75 |
Q |
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|||||||||| |||||||||| ||||||||||| ||||||| ||||||| | |||||| |
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| T |
27092739 |
cacatcttatactaggaagaactctttaatttagataatatatttcattttagcctctt |
27092797 |
T |
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