View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_27 (Length: 392)
Name: NF21193_low_27
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 14681078 - 14680728
Alignment:
| Q |
12 |
aagaaaacacagaacacacaatatacatgcgattacagatttcagccaatgtagctcgatattgtactattagtcaagtttaagatttacagtgtacaac |
111 |
Q |
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| T |
14681078 |
aagaaaacacagaacacacgatatacatgcgattacagatttcagccaatgtagctcgatattgtactattagtcaagtttaagatttaaagtgtacaac |
14680979 |
T |
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| Q |
112 |
ttgtttttagatagtacgaactcaatgatgtaattgcatgatttgaagttttatattgaaaaccaaaattgacatgttcaatggataaataggagacagt |
211 |
Q |
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| T |
14680978 |
ttgtttttagatagtacaaactcaatgatgtaattgcatgatttgaagttttatattgaaaaccaaaattgacatgttcaatggataaataggagacagt |
14680879 |
T |
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| Q |
212 |
tttagttattctatagtttgtttgagcgctaagattttatcagaactctccatcagattaaaaagaatgacatcatacaccgatgtaactaaacaaccaa |
311 |
Q |
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| T |
14680878 |
tttagttattcta---------tgagcgctaagattttatcagaactctccatcagattaaaaggaattacatcatacactgatgtaactaaacaaccaa |
14680788 |
T |
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| Q |
312 |
cgacttgcatttccattccgtaaaactaaaaacctatgtaaatatatacaacatacaccg |
371 |
Q |
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| T |
14680787 |
caacttgcatttccattctgtaaaactaaaaacctatgtaaatatatacaacatacaccg |
14680728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 361
Target Start/End: Complemental strand, 27735021 - 27734974
Alignment:
| Q |
314 |
acttgcatttccattccgtaaaactaaaaacctatgtaaatatataca |
361 |
Q |
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| T |
27735021 |
actttcatctccattccataaaactaaaaacctatgtaactatataca |
27734974 |
T |
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