View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21193_low_28 (Length: 385)

Name: NF21193_low_28
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21193_low_28
NF21193_low_28
[»] chr3 (3 HSPs)
chr3 (21-378)||(19766485-19766823)
chr3 (114-378)||(17682304-17682572)
chr3 (21-83)||(17682243-17682305)
[»] chr6 (6 HSPs)
chr6 (198-345)||(15434073-15434219)
chr6 (106-187)||(15434298-15434379)
chr6 (190-259)||(10093072-10093141)
chr6 (190-259)||(33044884-33044953)
chr6 (47-130)||(33044986-33045069)
chr6 (47-91)||(10092970-10093014)
[»] chr4 (5 HSPs)
chr4 (190-359)||(22292033-22292201)
chr4 (114-187)||(22292289-22292362)
chr4 (47-126)||(29862905-29862984)
chr4 (204-259)||(29862802-29862857)
chr4 (159-191)||(7135469-7135501)
[»] scaffold0045 (2 HSPs)
scaffold0045 (190-259)||(11072-11141)
scaffold0045 (53-122)||(11182-11251)
[»] chr8 (6 HSPs)
chr8 (190-259)||(5658370-5658439)
chr8 (42-128)||(14677564-14677650)
chr8 (190-259)||(14677460-14677529)
chr8 (190-259)||(31100310-31100379)
chr8 (47-130)||(5658254-5658337)
chr8 (47-130)||(31100412-31100495)
[»] scaffold0035 (2 HSPs)
scaffold0035 (191-259)||(35676-35744)
scaffold0035 (47-130)||(35559-35642)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 19766485 - 19766823
Alignment:
Q  21 gtcgacttccccgccaccgtatgcatcatcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagaga 120  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19766485 gtcgacttccccgccaccgtatgcatcatcgtatcagctagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccaccccgaataaagaga 19766584  T
Q  121 aagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccctttctatg 220  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  19766585 aagaagccatggaaatttgcaatctcgattggaagctcctgtcgttgctctctccattcatcaacaatgctctcaaggtaatcgcttttccctttctatg 19766684  T
Q  221 aaatgaattgtgttttgagtttaat--cactatccacctctcagttgtttcttcaattccattcattattgttaataaatttgcaattaggttcacaaca 318  Q
    |||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||                     ||||||||||||||    
T  19766685 aaatgaattgtgttttgagtttaatcacactctccacctctcagttgtttcttcaattccattca---------------------ttaggttcacaaca 19766763  T
Q  319 taatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19766764 taatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 19766823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 114 - 378
Target Start/End: Original strand, 17682304 - 17682572
Alignment:
Q  114 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcagggtaatcgcttttccct 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  17682304 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaatgctctcaaggtaatcgtttttccct 17682403  T
Q  214 ttctatgaaatgaattgtgttttgagtttaatcactatccacctctca----gttgtttcttcaattccattcattattgttaataaatttgcaattagg 309  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||||     ||||||||||||||||||||||||||| |||||||||||||||||||    
T  17682404 ttctatgaattgaattgtgttttgagattaatcactctccacctctcaatatattgtttcttcaattccattcattattggtaataaatttgcaattagg 17682503  T
Q  310 ttcacaacataatcagatttaggtctctgacgagaataaggtcatagttggcgattcagtttcatctca 378  Q
    ||||||||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  17682504 ttcacaacacagtcagatttgggtctctgacgagaatagggtcatagttgacgattcagtttcatctca 17682572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 17682243 - 17682305
Alignment:
Q  21 gtcgacttccccgccaccgtatgcatcatcgtatcagacagacaagcaaaaagaaccgcacaa 83  Q
    |||||||| ||| ||||||| |||  ||||||||||| |||||||||||||||||||||||||    
T  17682243 gtcgactttcccaccaccgtctgcggcatcgtatcagccagacaagcaaaaagaaccgcacaa 17682305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 198 - 345
Target Start/End: Complemental strand, 15434219 - 15434073
Alignment:
Q  198 gtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattgttaataaa 297  Q
    ||||||||||||||||||||| | | ||||||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||| | ||  ||||    
T  15434219 gtaatcgcttttccctttctacgtattgaattgtgtttttagtctaatcaccctccacctctcagttgtttcttcaattccattcattaat-tttgtaaa 15434121  T
Q  298 tttgcaattaggttcacaacataatcagatttaggtctctgacgagaa 345  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| |||||    
T  15434120 tttgcaattagattcacaacagaatcagatttgggtctctgatgagaa 15434073  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 15434379 - 15434298
Alignment:
Q  106 ctccgaataaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 187  Q
    ||||||| ||||||||| ||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||    
T  15434379 ctccgaaaaaagagaaataagccatggaaatttgcaatctcaagtgggggctcccatcgttgctctctcccttcatcaacaa 15434298  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 10093072 - 10093141
Alignment:
Q  190 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  10093072 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 10093141  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 33044953 - 33044884
Alignment:
Q  190 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    |||||| |||||| |||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  33044953 ctctcaaggtaatagcttttccttttctatgaattgaattgtgttttgagtctaatcactctccacctct 33044884  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 33045069 - 33044986
Alignment:
Q  47 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 130  Q
    ||||||||||  ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||||    
T  33045069 catcgtatcatccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccagataaagagaaagaagccat 33044986  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 10092970 - 10093014
Alignment:
Q  47 catcgtatcagacagacaagcaaaaagaaccgcacaatttttcca 91  Q
    ||||||||||| ||| ||| |||||||||| ||||||||||||||    
T  10092970 catcgtatcagccaggcaaacaaaaagaacagcacaatttttcca 10093014  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 190 - 359
Target Start/End: Complemental strand, 22292201 - 22292033
Alignment:
Q  190 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctctcagttgtttcttcaattccattcattattg 289  Q
    |||||| |||||||||||||||||||||||| | ||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| ||||||||| |     
T  22292201 ctctcaaggtaatcgcttttccctttctatgtattgaattgtgtttttagtctaattactctccacctctcagttgtttcttcaattgcattcattaat- 22292103  T
Q  290 ttaataaatttgcaattaggttcacaacataatcagatttaggtctctgacgagaataaggtcatagttg 359  Q
    ||  ||||||||||||||| ||||||||| ||||| |||| || |||||| ||||| | ||| |||||||    
T  22292102 tttgtaaatttgcaattagattcacaacacaatcacatttggggctctgatgagaacagggtaatagttg 22292033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 22292362 - 22292289
Alignment:
Q  114 aaagagaaagaagccatggaaatttgcaatctcgattggaagctcccgtcgttgctctctcccttcatcaacaa 187  Q
    ||||||||| ||||||||||||||||||||||| | |||| |||||| |||||||||||||| |||||||||||    
T  22292362 aaagagaaataagccatggaaatttgcaatctcaagtggaggctcccatcgttgctctctccgttcatcaacaa 22292289  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 29862984 - 29862905
Alignment:
Q  47 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaag 126  Q
    ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||    
T  29862984 catcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaag 29862905  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 29862857 - 29862802
Alignment:
Q  204 gcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    ||||||| ||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  29862857 gcttttctctttctatgaattgaattgtgttatgagtctaatcactctccacctct 29862802  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 191
Target Start/End: Original strand, 7135469 - 7135501
Alignment:
Q  159 ccgtcgttgctctctcccttcatcaacaatgct 191  Q
    |||||||| ||||||||||||||||||||||||    
T  7135469 ccgtcgtttctctctcccttcatcaacaatgct 7135501  T

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Target: scaffold0045 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 11141 - 11072
Alignment:
Q  190 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  11141 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 11072  T

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Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 11251 - 11182
Alignment:
Q  53 atcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaa 122  Q
    ||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||    
T  11251 atcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacttgccactccagataaagagaaa 11182  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 5658370 - 5658439
Alignment:
Q  190 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  5658370 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttttgagtctaatcactctccacctct 5658439  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 14677650 - 14677564
Alignment:
Q  42 tgcatcatcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagcc 128  Q
    |||| ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||    
T  14677650 tgcagcatcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaagcc 14677564  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 14677529 - 14677460
Alignment:
Q  190 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||| |||||  ||||||| |||||||||    
T  14677529 ctctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtccaatcactctccacctct 14677460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 31100379 - 31100310
Alignment:
Q  190 ctctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    |||||| |||||| |||||| | |||||||||| ||||||||||||||||| |||||||| |||||||||    
T  31100379 ctctcaaggtaatagctttttcttttctatgaattgaattgtgttttgagtctaatcactctccacctct 31100310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 5658254 - 5658337
Alignment:
Q  47 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 130  Q
    ||||||||||  ||||||| ||||||||||  ||||| ||||||| | ||||| |||||||||  |||||||||||||||||||    
T  5658254 catcgtatcatccagacaaacaaaaagaacaacacaacttttccacctaaaacctgccactccagataaagagaaagaagccat 5658337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 31100495 - 31100412
Alignment:
Q  47 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 130  Q
    ||||||||||  ||| ||| ||||||||||  ||||||||||||| | ||||  |||||||||  |||||||||||||||||||    
T  31100495 catcgtatcatccaggcaaacaaaaagaacaacacaatttttccacctaaaatctgccactccagataaagagaaagaagccat 31100412  T

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Target: scaffold0035 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 35676 - 35744
Alignment:
Q  191 tctcagggtaatcgcttttccctttctatgaaatgaattgtgttttgagtttaatcactatccacctct 259  Q
    ||||| |||||| ||||||||||||||||||| ||||||||||| ||||| |||||||| |||||||||    
T  35676 tctcaaggtaatagcttttccctttctatgaattgaattgtgttctgagtctaatcactctccacctct 35744  T

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Target: scaffold0035; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 35559 - 35642
Alignment:
Q  47 catcgtatcagacagacaagcaaaaagaaccgcacaatttttccaacaaaaacatgccactccgaataaagagaaagaagccat 130  Q
    ||||||||||| ||| ||| ||||||||||  ||||||||||||| | ||||| |||||||||  |||||||||||||||||||    
T  35559 catcgtatcagccaggcaaacaaaaagaacaacacaatttttccacctaaaacctgccactccatataaagagaaagaagccat 35642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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