View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_29 (Length: 383)
Name: NF21193_low_29
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 96 - 370
Target Start/End: Complemental strand, 38278663 - 38278389
Alignment:
| Q |
96 |
aagtgatttctcagcaacttcaatttcctctaaaatcctcactcttctcttagcaggaataggagcagttggaccaaaactaatataatgacctgaaaca |
195 |
Q |
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| T |
38278663 |
aagtgatttctcagcaacttcaatttcctctaaaatcctcactcttctcttagcaggaataggagcagttggaccaaaactaatataatgacctgaaaca |
38278564 |
T |
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| Q |
196 |
gcattgagtgcagagtacatatctctaaaagaagctcttgcaagaagtgctttttctcttctatatttagcaacccatgagtttgaagtgtctcttagtt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38278563 |
gcattgagtgcagagtacatatctctaaaagaagctcttgcaagaagtgctttttctcttctatatttagcaacccatgagtttgaagtgtctcttagtt |
38278464 |
T |
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| Q |
296 |
cagcaacagcagtagctacatttggatcattcttgtccagtgttatggttgttcttaccttgcttataacctcct |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38278463 |
cagcaacagcagtagctacatttggatcattcttgtccagtgttatggttgttcttaccttgcttataacctcct |
38278389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 38278740 - 38278704
Alignment:
| Q |
19 |
aaattcatttcctccaaatacattagcaacttaagtg |
55 |
Q |
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| T |
38278740 |
aaattcatttcctccaaatacattagcaacttaagtg |
38278704 |
T |
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