View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_30 (Length: 378)
Name: NF21193_low_30
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 51115223 - 51114882
Alignment:
| Q |
16 |
atagcatacatgagagacttgtgtattcaataatcaagtcaccacaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaaca |
115 |
Q |
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| T |
51115223 |
atagcatacatgagagacttgt--attcaataatcaagtcac-acaaacagaatcattaagcaacaacgaaagttgatcaaaaactaaatagaaacaaca |
51115127 |
T |
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| Q |
116 |
aaatatacaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaaccacctaatttccaaactcagga |
215 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51115126 |
aaatgtacacctaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgaaacagagaacaaccacctaatttccaaactcagga |
51115027 |
T |
|
| Q |
216 |
tttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattataccttgttattgaccatattaaaactaattaaacact |
315 |
Q |
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| T |
51115026 |
tttcctttttgataactaacgtgcattcaacactatctaaggttgctactagattttgattataccttgttattgaccatattaaaactaattaaacact |
51114927 |
T |
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| Q |
316 |
cgaatcaatgcagaaaagaatgagtagtttgtcaatagcttcaaa |
360 |
Q |
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| T |
51114926 |
cgaatcaatgcagaaaagaatgagtagtcagtcaatagtttcaaa |
51114882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 1119198 - 1119125
Alignment:
| Q |
122 |
acaccaaaatcttcctgagtcatagttttgtaagccatccattgtatttgaaatattgatacagagaacaacca |
195 |
Q |
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| T |
1119198 |
acaccaaaatcttcctgagtcgtagttttgtaagccgtacattgtaactgaaatactgaaacagagaacaacca |
1119125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 29020664 - 29020718
Alignment:
| Q |
105 |
tagaaacaacaaaatatacaccaaaatcttcctgagtcatagttttgtaagccat |
159 |
Q |
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|||| |||||| || ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
29020664 |
tagagacaacacaaaatacaccaaaatcttcctgagtcatagttctgtaaaccat |
29020718 |
T |
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