View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_32 (Length: 364)
Name: NF21193_low_32
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 31574780 - 31574877
Alignment:
| Q |
86 |
ttaaagaaaccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaac |
183 |
Q |
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| T |
31574780 |
ttaaacaaaccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaac |
31574877 |
T |
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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 31574705 - 31574751
Alignment:
| Q |
14 |
gcacagaacaaagtataaattaagaatattaaaaagtgatgagaatc |
60 |
Q |
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| T |
31574705 |
gcacagaacaaagtataaattaagaatatcaaaaagtgatgagaatc |
31574751 |
T |
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Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 38029124 - 38029198
Alignment:
| Q |
92 |
aaaccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttac |
166 |
Q |
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| T |
38029124 |
aaaccagagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgatctaatagaaatttac |
38029198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 6509582 - 6509679
Alignment:
| Q |
86 |
ttaaagaaaccagagttttcaagagccaagtgattatagtggttgatttgtttagacaaagttgatctaatagaattttacgaagtgaaaagagaaac |
183 |
Q |
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| T |
6509582 |
ttaaacaaacgagagttttcaagagccaagtgattatagtggttgattcgtttagacaaagttgttgttatagaaatttatgaagtgaaaagagaaac |
6509679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 6509504 - 6509550
Alignment:
| Q |
14 |
gcacagaacaaagtataaattaagaatattaaaaagtgatgagaatc |
60 |
Q |
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| T |
6509504 |
gcacagaacaaagtataaattaagaatgtcaaaaagtaatgagaatc |
6509550 |
T |
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