View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_36 (Length: 295)
Name: NF21193_low_36
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 3826539 - 3826277
Alignment:
| Q |
19 |
actactacatatgtgagttacttgctatacaagtaatcaaccaaaactaaagtatcttatttattttatgtgcatgttgtttatcaaactgatgtagttc |
118 |
Q |
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| T |
3826539 |
actactacatatgtgagttacttgctatacaagtaatcaaccaaaactaaagtatcttatttattttatgtgcatgtcgtttatcaaactgatgtagttc |
3826440 |
T |
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| Q |
119 |
tctaagtaacatatgaaacattttttgcagcatttggtaaaccacgtactttaatatcagcagaagccatgtctaatagacaattgaactgtctcttaca |
218 |
Q |
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| T |
3826439 |
tctaagtaacatatgaaacatgttttgcagcatttggtaaaccacgtactttaatatcagcagaagccatgtctaagagacaatcgaactgtctcttaca |
3826340 |
T |
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| Q |
219 |
ttagaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctattttgcttcaca |
281 |
Q |
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| T |
3826339 |
ttagaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctattttgcttcaca |
3826277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 3825796 - 3825735
Alignment:
| Q |
116 |
ttctctaagtaacatatgaaacattttttgcagcatttggtaaaccacgtactttaatatca |
177 |
Q |
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| T |
3825796 |
ttctctaagcaccatatgaaacatttgttgcagcatttggtaaaccacagacattaatatca |
3825735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 201 - 281
Target Start/End: Original strand, 49772187 - 49772266
Alignment:
| Q |
201 |
attgaactgtctcttacattagaatgttcttcaggtgagttataagttagcgtacaaaacttcttcctattttgcttcaca |
281 |
Q |
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| T |
49772187 |
attgaactgtcgcctaaattggaatgttcgtcaggtgagttacaa-ttagcttactaaacttcttcctattttacttcaca |
49772266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 49772070 - 49772143
Alignment:
| Q |
113 |
tagttctctaagtaacatatgaaacatttt-ttgcagcatttggtaaaccacgtactttaatatcagcagaagc |
185 |
Q |
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| T |
49772070 |
tagttctcttggtaacaaatgaaacattttattgcagcatttggtaaaccgcaggctttaatatcagaagaagc |
49772143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 11753011 - 11753053
Alignment:
| Q |
26 |
catatgtgagttacttgctatacaagtaatcaaccaaaactaa |
68 |
Q |
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| T |
11753011 |
catatgtgagttaattgctatacaaggaatcaaccaaaactaa |
11753053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 16943621 - 16943663
Alignment:
| Q |
25 |
acatatgtgagttacttgctatacaagtaatcaaccaaaacta |
67 |
Q |
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| T |
16943621 |
acatatgggagttacttgttatacaagtaatcaacgaaaacta |
16943663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 17014286 - 17014328
Alignment:
| Q |
25 |
acatatgtgagttacttgctatacaagtaatcaaccaaaacta |
67 |
Q |
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| T |
17014286 |
acatatgggagttacttgttatacaagtaatcaacgaaaacta |
17014328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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