View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_38 (Length: 277)
Name: NF21193_low_38
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 55271786 - 55271530
Alignment:
| Q |
1 |
aaatgcttatttatggtttggttataggaatgtgtttgtgttttcttgccttaattacttttgcttgtgttgcagatggctgagattgatttggaatggc |
100 |
Q |
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| T |
55271786 |
aaatgcttatttatggtttggttataggaatgtgtttgtgttttattgccttaattacttttgcttgtgttgcagatggctgagattgatttggaatggc |
55271687 |
T |
|
| Q |
101 |
caaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgattgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55271686 |
caaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgattgca |
55271587 |
T |
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| Q |
201 |
tgcttaaaatacatatataccatcatcatattcatattcatgtcttggatatggttctttc |
261 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55271586 |
tgcttaaaatac----ataccatcatcatattcatattcatgtcttggatatggttctttc |
55271530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 55265903 - 55265663
Alignment:
| Q |
5 |
gcttatttatggtttggttataggaatgtgtttgtgtt--------ttcttgccttaattacttttgcttgtgttgcagatggctgagattgatttggaa |
96 |
Q |
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| T |
55265903 |
gcttatttatggtttggttatgtgaatgtgtttgtgttgcactgttttattgccttaattgattttgcttgtgttgcagatggctgagattgatttggaa |
55265804 |
T |
|
| Q |
97 |
tggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgat |
196 |
Q |
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| T |
55265803 |
tggccaaagaaagacaaccgtcgtttgcttcatgttgtttatcgtgttggtgaccttgaacgcaccattaagtatgtttaacttttgttagattattgat |
55265704 |
T |
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| Q |
197 |
tgcatgcttaaaatacatatataccatcatcatattcatattcat |
241 |
Q |
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| T |
55265703 |
tgcatgcttaaaatac----aaaccatcatcataatcatattcat |
55265663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 55265660 - 55265625
Alignment:
| Q |
226 |
tcatattcatattcatgtcttggatatggttctttc |
261 |
Q |
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| T |
55265660 |
tcatattcatattcatgtcttggatatggttctttc |
55265625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 43369186 - 43369158
Alignment:
| Q |
122 |
tgcttcatgttgtttatcgtgttggtgac |
150 |
Q |
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| T |
43369186 |
tgcttcatgttgtttatcgtgttggtgac |
43369158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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