View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21193_low_39 (Length: 276)
Name: NF21193_low_39
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_39 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 2176089 - 2175859
Alignment:
| Q |
10 |
atatgaaggaacacgtgttgattactatatttgctaatgctggaagtgcttttggatctgggtctccttatgctgttgggattgttaatattattaaagc |
109 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2176089 |
atatgaaggaacatgtgttgattactatatttgctaatgctggaagtgcttttggatctgggtctccttatgctgttgggattgttaatattattaaagc |
2175990 |
T |
|
| Q |
110 |
gttttatggaaggagtatttcttttcatgctgcttggcttctcattatcaccactcaggtgaggtttcttttcttgatgctaattattgatagttgtaat |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2175989 |
gttttatggaaggagtatttcttttcatgctgcttggcttctcattatcaccactcaggtgaggtttcttttcttgatgctaattattgttagttgtaat |
2175890 |
T |
|
| Q |
210 |
tttgaaaatcataatctcattatcttctttt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
2175889 |
tttgaaaatcataatctcattatcttctttt |
2175859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 170
Target Start/End: Original strand, 36900287 - 36900445
Alignment:
| Q |
12 |
atgaaggaacacgtgttgattactatatttgctaatgctggaagtgcttttggatctgggtctccttatgctgttgggattgttaatattattaaagcgt |
111 |
Q |
| |
|
||||||||||| || | ||||| |||||||| |||||||| ||| ||||| ||||| || ||||||||||||| ||||| ||||| ||||| |||| |
|
|
| T |
36900287 |
atgaaggaacatgttcttattaccatatttgcaaatgctggggctgcgtttgggtctggttcatcttatgctgttggtattgtgaatatcattaaggcgt |
36900386 |
T |
|
| Q |
112 |
tttatggaaggagtatttcttttcatgctgcttggcttctcattatcaccactcaggtg |
170 |
Q |
| |
|
|||||||||||| ||| || |||| |||||| |||||||| ||||| || ||||||||| |
|
|
| T |
36900387 |
tttatggaaggaatatatcgtttcttgctgcatggcttctgattattacgactcaggtg |
36900445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University