View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_40 (Length: 272)
Name: NF21193_low_40
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 21 - 261
Target Start/End: Complemental strand, 7410287 - 7410046
Alignment:
| Q |
21 |
atcaggccgtggaaaaatataacaactcaacttagcatccctcctaccgtgttttcctcccataaacaaatttaattggctacaatgannnnnnna-att |
119 |
Q |
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| T |
7410287 |
atcaggccgtggaaaaatataacaactcaacttagcatccttcctaccgtgttttcctcccataaacaaatttaattggctacaatgattttttttgatt |
7410188 |
T |
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| Q |
120 |
cattcgtcagacatttttcgctttatatagcggtcctctttttataattctcaaagtaacctttttccacatcttctcccttcttcaaatctatctcaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
7410187 |
cattcgtcagacatttttcgctttatatagcggtcctctttttataattctcaaagtaacctttctccatatcttctcccttcttcaaatctatctcaaa |
7410088 |
T |
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| Q |
220 |
acatacttcttattctctttccgactgaccatctctgctcct |
261 |
Q |
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| T |
7410087 |
acatactccttattctctttcggactgactatctcttctcct |
7410046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 32319022 - 32319096
Alignment:
| Q |
28 |
cgtggaaaaatataacaactcaacttagcatccctcctaccgtgttttcctcccataaacaaatttaattggcta |
102 |
Q |
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|||||||||||||| |||||||||||| ||||| ||| | ||||||||| |||||||||||||| |||||||| |
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| T |
32319022 |
cgtggaaaaatatatcaactcaacttaacatccttcccagcgtgttttctgcccataaacaaattcgattggcta |
32319096 |
T |
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