View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21193_low_41 (Length: 269)

Name: NF21193_low_41
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21193_low_41
NF21193_low_41
[»] chr3 (12 HSPs)
chr3 (18-269)||(36024634-36024885)
chr3 (38-269)||(36003557-36003788)
chr3 (114-189)||(23441017-23441092)
chr3 (114-189)||(23473549-23473624)
chr3 (114-187)||(23387378-23387451)
chr3 (114-187)||(23455161-23455234)
chr3 (114-189)||(23353043-23353118)
chr3 (114-187)||(23479685-23479758)
chr3 (114-187)||(23500164-23500237)
chr3 (114-187)||(23448396-23448469)
chr3 (120-183)||(23405758-23405821)
chr3 (120-183)||(23464389-23464452)
[»] chr4 (1 HSPs)
chr4 (24-254)||(12895734-12895964)
[»] chr2 (2 HSPs)
chr2 (24-225)||(16336241-16336442)
chr2 (22-225)||(16122756-16122959)
[»] scaffold0201 (1 HSPs)
scaffold0201 (112-184)||(12545-12617)
[»] scaffold0570 (1 HSPs)
scaffold0570 (114-187)||(10637-10710)


Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 36024634 - 36024885
Alignment:
Q  18 acacctttgagtccacatctggttgattcttcgcttacattttcgagtaaacaatgatgatcaaattgggaacacaatttggaatataaatgtttcgcaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36024634 acacctttgagtccacatctggttgattcttcgcttacattttcgagtaaacaatgatgatcaaattgggaacacagtttggaatataaatgtttcgcaa 36024733  T
Q  118 gagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagtaacgatttaacctcttcatacttttcctc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36024734 gagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagtaacgatttaacctcttcatacttttcctc 36024833  T
Q  218 aattccaaaaaggtgcccattaacttcaaatgggtgtatcagattcaatttt 269  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36024834 aattccaaaaaggtgcccattaacttcaaatgggtgtctcagattcaatttt 36024885  T

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Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 269
Target Start/End: Original strand, 36003557 - 36003788
Alignment:
Q  38 ggttgattcttcgcttacattttcgagtaaacaatgatgatcaaattgggaacacaatttggaatataaatgtttcgcaagagtggtctttcctatgccg 137  Q
    |||||||||||| ||||||||||| || || |||||  | |||||||| ||||||||||| | |||||||| ||| || ||||||||||||||||| |||    
T  36003557 ggttgattcttcccttacattttctaggaagcaatggcgttcaaattgagaacacaatttagcatataaatctttagctagagtggtctttcctataccg 36003656  T
Q  138 cccatgccccataatcctaggcctctaacatcatttgacccaattttcagtaacgatttaacctcttcatacttttcctcaattccaaaaaggtgcccat 237  Q
    ||||| ||||||||||| ||   ||||||||||||||||  |||||||||||| |||| |  |||||||||||||| ||||||||||| ||| |||  ||    
T  36003657 cccattccccataatccaagtgatctaacatcatttgacaaaattttcagtaatgattcagtctcttcatactttttctcaattccaacaagttgcatat 36003756  T
Q  238 taacttcaaatgggtgtatcagattcaatttt 269  Q
    ||||||||||||||| | || |||||||||||    
T  36003757 taacttcaaatgggtatctccgattcaatttt 36003788  T

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Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 23441017 - 23441092
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagta 189  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||| |||||||||||||    
T  23441017 gcaagagtggtctttcctatgccacccatgccccatattccaaggactctaacatcatttgagccaattttcagta 23441092  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 23473549 - 23473624
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagta 189  Q
    ||||||||||||||||||||||| ||||||||||||| ||| ||| |||||||||||||||| |||||||||||||    
T  23473549 gcaagagtggtctttcctatgccacccatgccccatattccaaggactctaacatcatttgagccaattttcagta 23473624  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 23387378 - 23387451
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcag 187  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||| |||| ||||||||||||| |||||||||    
T  23387378 gcaagggtggtctttcctatgccacccatgccccatattccaaggactctgacatcatttgaccaaattttcag 23387451  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 23455161 - 23455234
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcag 187  Q
    ||||| || |||||||||||||| ||||||||||||| ||| ||| || |||||||||||||||||||||||||    
T  23455161 gcaagggttgtctttcctatgccacccatgccccatattccaaggactttaacatcatttgacccaattttcag 23455234  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 23353043 - 23353118
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagta 189  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| |||  || ||||||||||||| ||||||||||||    
T  23353043 gcaagggtggtctttcctatgccacccatgccccatattccaaggattccaacatcatttgactcaattttcagta 23353118  T

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Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 23479685 - 23479758
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcag 187  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||| |||| || |||| |||||||||||||||    
T  23479685 gcaagggtggtctttcctatgccacccatgccccatattccaaggactctgacttcatgtgacccaattttcag 23479758  T

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Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 23500164 - 23500237
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcag 187  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||| |||| || |||| |||||||||||||||    
T  23500164 gcaagggtggtctttcctatgccacccatgccccatattccaaggactctgacttcatgtgacccaattttcag 23500237  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 187
Target Start/End: Original strand, 23448396 - 23448469
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcag 187  Q
    ||||| |||||||||||||| || ||||||||||||| ||| ||  |||| || ||||||||||||||||||||    
T  23448396 gcaagggtggtctttcctatcccacccatgccccatattccaagtactctgacttcatttgacccaattttcag 23448469  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 23405758 - 23405821
Alignment:
Q  120 gtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattt 183  Q
    ||||||||||||||||| ||||||||||||| ||| | |  | |||||||||||||||||||||    
T  23405758 gtggtctttcctatgccacccatgccccatattccaatgattttaacatcatttgacccaattt 23405821  T

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Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 23464389 - 23464452
Alignment:
Q  120 gtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattt 183  Q
    ||||||||||||||||| ||||||||||||| ||| | |  | |||||||||||||||||||||    
T  23464389 gtggtctttcctatgccacccatgccccatattccaatgattataacatcatttgacccaattt 23464452  T

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Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 12895964 - 12895734
Alignment:
Q  24 ttgagtccacatctggttgattcttcgcttacattttcgagtaaacaatgatgatcaaattgggaacacaatttggaatataaatgtttcgcaagagtgg 123  Q
    ||||||||||  ||||||||||| || || |||||||| |  || || ||| | |||||||| ||||||||||| | ||||| || ||| || |||||||    
T  12895964 ttgagtccacgcctggttgattcctccctaacattttcaatgaagcagtgacgttcaaattgagaacacaatttagcatatagatctttagctagagtgg 12895865  T
Q  124 tctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagtaacgatttaacctcttcatacttttcctcaattcc 223  Q
    ||||||||||||||||||||||||| || || |||  | |||||||||||||||||||||||| |||||||| |||||||||| ||||||  ||||||||    
T  12895864 tctttcctatgccgcccatgccccaaaacccaagggttttaacatcatttgacccaattttcattaacgattcaacctcttcacactttttatcaattcc 12895765  T
Q  224 aaaaaggtgcccattaacttcaaatgggtgt 254  Q
    || ||| | |  |||||||||||||||||||    
T  12895764 aacaagttccttattaacttcaaatgggtgt 12895734  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 16336442 - 16336241
Alignment:
Q  24 ttgagtccacatctggttgattcttcgcttacattttcgagtaaacaatgatgatcaaattgggaacacaatttggaatataaatgtttcgcaagagtgg 123  Q
    ||||||||||| || ||||||||||| |||||||||||||| ||||||||||  |||||||| |||||  | ||   |||||||  ||| || |||| ||    
T  16336442 ttgagtccacacctagttgattcttcccttacattttcgaggaaacaatgatattcaaattgagaacaatagttaccatataaactttttgctagagcgg 16336343  T
Q  124 tctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagtaacgatttaacctcttcatacttttcctcaattcc 223  Q
    ||||||||||||| ||||||||||||||||| ||   ||||||||||||||||||| | |||  |||| ||| || ||||||||||||||| ||||||||    
T  16336342 tctttcctatgccccccatgccccataatccaagcgttctaacatcatttgacccattattcgttaacaattcaatctcttcatacttttcttcaattcc 16336243  T
Q  224 aa 225  Q
    ||    
T  16336242 aa 16336241  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 22 - 225
Target Start/End: Original strand, 16122756 - 16122959
Alignment:
Q  22 ctttgagtccacatctggttgattcttcgcttacattttcgagtaaacaatgatgatcaaattgggaacacaatttggaatataaatgtttcgcaagagt 121  Q
    |||||||||||||  | ||||||||||| |||||||||||||| ||||||||||  || ||||| |||||  | ||   |||||| | ||| || ||||     
T  16122756 ctttgagtccacacttagttgattcttcccttacattttcgaggaaacaatgatattcgaattgagaacaatagttatcatataatttttttgctagagc 16122855  T
Q  122 ggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcagtaacgatttaacctcttcatacttttcctcaatt 221  Q
    ||||||||||||||| ||||||||||||||||| ||   ||||||||||||||||||| | |||  |||| ||| || ||||||||| ||||  ||||||    
T  16122856 ggtctttcctatgccccccatgccccataatccaagcgttctaacatcatttgacccattattcgttaacaattcaatctcttcatattttttttcaatt 16122955  T
Q  222 ccaa 225  Q
    ||||    
T  16122956 ccaa 16122959  T

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Target: scaffold0201 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 12545 - 12617
Alignment:
Q  112 tcgcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaatttt 184  Q
    ||||||| ||||| |||| |||||| ||||||||||||| ||| ||| |||||||||||||||||||||||||    
T  12545 tcgcaagggtggtttttcgtatgccacccatgccccatattccaaggactctaacatcatttgacccaatttt 12617  T

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Target: scaffold0570 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 10710 - 10637
Alignment:
Q  114 gcaagagtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattttcag 187  Q
    ||||| ||||||||||||||||| ||||||||||||| ||| ||| |||| || |||| |||||||||||||||    
T  10710 gcaagggtggtctttcctatgccacccatgccccatattccaaggactctgacttcatgtgacccaattttcag 10637  T

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