View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21193_low_49 (Length: 242)
Name: NF21193_low_49
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34951867 - 34951636
Alignment:
| Q |
1 |
atgtctgttaaatgggcacttgaccttaaaataccagatatcatccacaaccatggtcctgccatgactctttctgagctcatttcagctcttaaggttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||| |
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| T |
34951867 |
atgtctgttaaatgggcacttgaccttaaaataccagatatcatccacaaccatggccatgccatgactctttctgagctcatttcatctcttaaggttc |
34951768 |
T |
|
| Q |
101 |
cacaatcaaaagaaacatgcgtccgtcgactcatgcgcttattagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34951767 |
cacaatcaaaagaaacatgcgtccgtcgactcatgcgcttattagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatgc |
34951668 |
T |
|
| Q |
201 |
tcttacaccaacatcacaactccttgtctctg |
232 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
34951667 |
tcttacaccaacatcacaactccttgtctctg |
34951636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 34947396 - 34947166
Alignment:
| Q |
1 |
atgtctgttaaatgggcacttgaccttaaaataccagatatcatccacaaccatggtcctgccatgactctttctgagctcatttcagctcttaaggttc |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||| |
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| T |
34947396 |
atgtctgtcaaatgggcacttgaccttaaaataccagatatcatccacaaccatcgccaagccattactctttctgagctcatttcagctcttaaggttc |
34947297 |
T |
|
| Q |
101 |
cacaatcaaaagaaacatgcgtccgtcgactcatgcgcttattagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatgc |
200 |
Q |
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||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
34947296 |
cacaatcaaaagaaacatgcgtcggtcgactaatgcgcttgttagcacacattgatttctttgcaattgtcaaaattgatgaaaccaaagaaggatatac |
34947197 |
T |
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| Q |
201 |
tcttacaccaacatcacaactccttgtctct |
231 |
Q |
| |
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|||||| |||||||||||||||||||||||| |
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| T |
34947196 |
tcttactccaacatcacaactccttgtctct |
34947166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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