View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21193_low_50 (Length: 238)
Name: NF21193_low_50
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21193_low_50 |
 | |
|
| [»] scaffold0640 (1 HSPs) |
| |
|
| [»] scaffold0271 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0640 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 3156 - 3369
Alignment:
| Q |
17 |
acctttaagttcttccaacatgacttctccttcagaagctacattccatccatagaaaaccaacttctcagatactttatcagaagaagaaatgttccat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3156 |
acctttaagttcttccaacatgacttctccttcagaagctacattccatccatagaaaatcaacttctcagatactttatcagaagaagaaatgttccat |
3255 |
T |
|
| Q |
117 |
aacatttgagactaggtatcaagtatcaaccaactaaatcatgttagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccatatttca |
216 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3256 |
aacatttgagactag-------gtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccata-ttca |
3347 |
T |
|
| Q |
217 |
gactttggcttcttcaactaat |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3348 |
gactttggcttcttcaactaat |
3369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 41407786 - 41407600
Alignment:
| Q |
17 |
acctttaagttcttccaacatgacttctccttcagaagctacattccatccatagaaaaccaacttctcagatactttatcagaagaagaaatgttccat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41407786 |
acctttaagttcttccaacatgacttctccttcagaagctacattccatccatagaaaaccaacttctcagatactttatcagaagaagaaatgttccat |
41407687 |
T |
|
| Q |
117 |
aacatttgagactaggtatcaagtatcaaccaactaaatcatgttagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccat |
210 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41407686 |
aacatttgagactaggta-------tcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccat |
41407600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 1041973 - 1041850
Alignment:
| Q |
76 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagactaggtatcaagtatcaaccaactaaatcatgttagcttacattatcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
1041973 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaag-------gtatcaaccaattaaatcatgctagcttacattatcc |
1041881 |
T |
|
| Q |
176 |
taaaatggatgtcctttgaaaacatgtaggt |
206 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |
|
|
| T |
1041880 |
taaaattgatgtcctttgaaaacaagtaggt |
1041850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 41193038 - 41192915
Alignment:
| Q |
76 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagactaggtatcaagtatcaaccaactaaatcatgttagcttacattatcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
41193038 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaag-------gtatcaaccaattaaatcatgctagcttacattatcc |
41192946 |
T |
|
| Q |
176 |
taaaatggatgtcctttgaaaacatgtaggt |
206 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |
|
|
| T |
41192945 |
taaaattgatgtcctttgaaaacaagtaggt |
41192915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 76 - 208
Target Start/End: Complemental strand, 41200294 - 41200169
Alignment:
| Q |
76 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagactaggtatcaagtatcaaccaactaaatcatgttagcttacattatcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
41200294 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaag-------gtatcaaccaattaaatcatgctagcttacattatcc |
41200202 |
T |
|
| Q |
176 |
taaaatggatgtcctttgaaaacatgtaggtcc |
208 |
Q |
| |
|
|||||| ||||||||||||||| | |||||||| |
|
|
| T |
41200201 |
taaaattgatgtcctttgaaaataagtaggtcc |
41200169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 210
Target Start/End: Original strand, 23712 - 23898
Alignment:
| Q |
17 |
acctttaagttcttccaacatgacttctccttcagaagctacattccatccatagaaaaccaacttctcagatactttatcagaagaagaaatgttccat |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23712 |
acctttaagttcttccaacatgacttctccttcagaagctacattccatccatagaaaatcaacttctcagatactttatcagaagaagaaatgttccat |
23811 |
T |
|
| Q |
117 |
aacatttgagactaggtatcaagtatcaaccaactaaatcatgttagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccat |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23812 |
aacatttgagactag-------gtatcaaccaactaaatcatgctagcttacattatcctaaaatggatgtcctttgaaaacatgtaggtccat |
23898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 33323564 - 33323441
Alignment:
| Q |
76 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagactaggtatcaagtatcaaccaactaaatcatgttagcttacattatcc |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33323564 |
ccaacttctcagatactttatcagaagaagaaatgttccataacatttgagacaag-------gtatcaaccaattaaatcatgctagcttacattatcc |
33323472 |
T |
|
| Q |
176 |
taaaatggatgtcctttgaaaacatgtaggt |
206 |
Q |
| |
|
|||||| ||||||||||||||||| |||||| |
|
|
| T |
33323471 |
taaaattgatgtcctttgaaaacaagtaggt |
33323441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 38951657 - 38951575
Alignment:
| Q |
20 |
tttaagttcttccaacatgacttctccttcagaagctacattccatccatagaaaaccaacttctcagatactttatcagaag |
102 |
Q |
| |
|
|||||| |||||||||| |||||| ||||||||||| ||||||||||| ||| |||||||||| ||||||||||| |||||| |
|
|
| T |
38951657 |
tttaagatcttccaacaagacttcagcttcagaagctgcattccatccagagagaaccaacttcccagatactttaccagaag |
38951575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University