View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21193_low_8 (Length: 665)

Name: NF21193_low_8
Description: NF21193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21193_low_8
NF21193_low_8
[»] chr5 (1 HSPs)
chr5 (20-648)||(29702773-29703398)


Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 20 - 648
Target Start/End: Complemental strand, 29703398 - 29702773
Alignment:
Q  20 agggtagcagggaagagaggagatcaagaaaacacactgacgatgaatctatgccgaggtcaagagaagatcatgataggaagcaagacaacagatcata 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29703398 agggtagcagggaagagaggagatcaagaaaacacactgacgatgaatctatgccgaggtcaagagaagatcatgataggaagcaagacaacagatcata 29703299  T
Q  120 tcataaagacgctgatcgatctgaatcaaaaggaagaaatgattctgaccgaagagaagaaaagaggtccagaaggtaatggcaattgagatctgggttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29703298 tcataaagacgctgatcgatctgaatcaaaaggaagaaatgattctgaccgaagagaagaaaagaggtccagaaggtaatggcaattgagatctgggttt 29703199  T
Q  220 atcatggacaagaatgggtattggagtaagtccaatgacatttgataaccgaaaacgttgcttgtttgtttatactacttccatagtcattttgttatat 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||    
T  29703198 atcatggacaagaatgggtattggagtaagtccaatgacatttgataaccgaaaacgttgcttgtttgtttatactactg---tagtcattttgttatat 29703102  T
Q  320 gatttacttgcactgttgtgagagcagtattagttgtccttttggagtggcgagtttaatcaatattgtttggctccatggtggcaaccaccaatgctag 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |    
T  29703101 gatttacttgcactgttgtgagagcagtattagttgtccttttggagtggtgagtttgatcaatattgtttggctccatggtgtcaaccaccaatgctgg 29703002  T
Q  420 ttcttcatgcattcaattatatggagcatggttgtgtaaacttttttcaccaaaaaatgaaacgtttataaacaaaagttaagacctattaatattgata 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29703001 ttcttcatgcattcaattatatggagcatggttgtgtaaacttttttcaccaaaaaatgaaacgtttataaacaaaagttaagacctattaatattgata 29702902  T
Q  520 atcacttgattgctcttagtccctcctaactcatattccttgatctgtctctgactagaccttccgcttgctcaagttaaaacttgagctcaaattctaa 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29702901 atcacttgattgctcttagtccctcctaactcatattccttgatctgtctctgactagaccttccgcttgctcaagttaaaacttgagctcaaattctaa 29702802  T
Q  620 attcaacttgagttgaatcatacataatt 648  Q
    |||||||||||||||||||||||||||||    
T  29702801 attcaacttgagttgaatcatacataatt 29702773  T

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