View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21194_high_1 (Length: 644)
Name: NF21194_high_1
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 17 - 632
Target Start/End: Complemental strand, 45391440 - 45390825
Alignment:
| Q |
17 |
catatttctcgcgtctcaatgagctctcaccatggttttataaagctatactttgtagcttctgtaaagtcgtgtgttttctagacaattgaatgtgatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391440 |
catatttctcgcgtctcaatgagctctcaccatggttttataaagctatactttgtagcttctgtaaagtcgtgtgttttctagacaattgaatgtgatt |
45391341 |
T |
|
| Q |
117 |
ccaaatgtatgctacttcatggatatactaaaatgaaaagggacatacgacccttttcggtccctttcacttcttttatcattga-ttttgaaaattgac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45391340 |
ccaaatgtatgctacttcatggatatactaaaatgaaa-gggacatacgacccttttcggtccctttcacttcttttatcattgccttttgaaaattgac |
45391242 |
T |
|
| Q |
216 |
ctgaatgcctataaattggactaaagcaaagtaatattttttaactcatggcccttggttttagttaaattggactatagcaaagtattatttattgagt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391241 |
ctgaatgcctataaattggactaaagcaaagtaatattttttaactcattgcccttggttttagttaaattggactatagcaaagtattatttattgagt |
45391142 |
T |
|
| Q |
316 |
gccttcagttctgtttctacgcgttctatgtgtcgatccttgctgagttttccgtcttcgtgtgttgctgtaacatctgtttatatgtgtttcctgttca |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391141 |
gccttcagttctgtttctacgcgttctatgtgtcgatccttgctgagttttccgtcttcgtgtgttgctgtaacatctgtttatatgtgtttcctgttca |
45391042 |
T |
|
| Q |
416 |
tgacttcatgttctcgctttccatctttgatttgttccgtcttgcttgttcatgttttcgtcatctctttctcatggtgttgacaacaacggcaatggat |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45391041 |
tgacttcatgttctcgctttccatctttgatttgttccgtcttgcttgttcatgttttcgtcatctctttctcatggtgttgacaacaacggcaatggat |
45390942 |
T |
|
| Q |
516 |
aagagaaagagcaacttccaatggtgtcgtagaaacagaactctgaatctcgccatattcaccaactctgaatctcgcctctaagtggaatttttcttta |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45390941 |
aagagaaagagcaacttccaatggtgtcgtagaaacagaactctgaatctcgccatattcaccaactctgaatctcgcctctaagtggaatttttcttta |
45390842 |
T |
|
| Q |
616 |
ttagattttttctgttc |
632 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
45390841 |
ttggattttttctgttc |
45390825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 5967036 - 5966974
Alignment:
| Q |
17 |
catatttctcgcgtctcaatgagctctcaccatggttttataaagctatactttgtagcttct |
79 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
5967036 |
catatttctcgcgtttcaaggagctctcaccatggttttatgaagctacattttgtagcttct |
5966974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University