View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21194_high_10 (Length: 352)
Name: NF21194_high_10
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_high_10 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 34755103 - 34754768
Alignment:
| Q |
16 |
cacaaagaaaatgaaggcccaacaactggaacatacacaagattgaaaagttgaaatcaaagaggttttctgaacagccagatgtaccagaggaaagcaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755103 |
cacaaagaaaatgaaggcccaacaactggaacatacacaagattgaaaagttgaaatcaaagaggttttctgaacagccagatgtaccagaggaaagcaa |
34755004 |
T |
|
| Q |
116 |
ggaacacattaaaagagaagtagaaatatggaattggaagcatagagatatgttgttaaagataagtaggagagttcaattaaagacggggtgatgagga |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34755003 |
ggaacacattaaa-gagaagtagaaatatggaattggaagcatagagatatgttgttaaagataagtaggagagttcaattaaagacggggtgatgagga |
34754905 |
T |
|
| Q |
216 |
aagcttacttagacaacgacatgcgccaaatggatggtaactggtaaggtaacattcttgtctcgtaagatcaggtggcaagaattaaaatttgtgaaca |
315 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34754904 |
aagattacttagacaacgacatgcgccaaatggatggtaactggtaaggcaacattcttgtctcgtaagatcaggtggcaagaattaaaatttgtgaaca |
34754805 |
T |
|
| Q |
316 |
gcggtagctggtcccaacttcaagtgtagtcagaatc |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34754804 |
gcggtagctggtcccaacttcaagtgtagtcagaatc |
34754768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University