View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_high_11 (Length: 330)
Name: NF21194_high_11
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 316
Target Start/End: Complemental strand, 10002159 - 10001848
Alignment:
| Q |
5 |
gttagcagtttcttataacctgaataagcagcttagtttttgttgaattgagctttgaattttgattgttaaaacttgaaaaaattgaatgattagtgat |
104 |
Q |
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| T |
10002159 |
gttagcagtttcttataacctgaataagcagcttagtttttgttgaattgacctttgaattttcattggtaaaacttgaaaaaattgaatgattagtgat |
10002060 |
T |
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| Q |
105 |
taaagtcatacaagttgaacaattaccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataagaacttatcaagccttatttttaactcatc |
204 |
Q |
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| T |
10002059 |
taaagtcatacaagttgaacaattaccgtcaaatttaacgaacttatagtgtagaattgtgaaggaataagaacttatcaagccttatttttaactcatc |
10001960 |
T |
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| Q |
205 |
tctgtttattttgtattgcacattgtacagtgctttgaattggtggaccatcatgtccaacttttcttctcaaaaatagctcgaatgatgcctgcagaac |
304 |
Q |
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| T |
10001959 |
tctgtttgttttgtattgcacattgtacagtgctttgaattggtggaccatcatgttcaacttttcttctcaaaaatagctcgaatgatgcctgcagaac |
10001860 |
T |
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| Q |
305 |
tctgtgaaaagt |
316 |
Q |
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| T |
10001859 |
tctgtgaaaagt |
10001848 |
T |
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