View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_high_6 (Length: 402)
Name: NF21194_high_6
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 51209104 - 51208752
Alignment:
| Q |
1 |
gatcggagaaaaatgaggagagtaaactgcagacagcaagggaaaaagtcaaaaacgtgtttgttatattatatcta-------ccagtaaaatggttta |
93 |
Q |
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| T |
51209104 |
gatcggagaaaaatgaggagagtaacatgcagacagtaagggaaaaagtcaaaaacgtgtttgttatattatatctagtatctaccagtaaaatggttta |
51209005 |
T |
|
| Q |
94 |
ataaactaaacttcccaatatatctccttttttgtcaccttgctgtacatttttaagttgtaccattttcatagatacaagttaaaaatatttttggcat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51209004 |
ataaactaaacttcccaatatatctccttttttgtcaccttgctgtacttttttaagttgtaccattttcgtagatacaagttaaaaatatttttggcat |
51208905 |
T |
|
| Q |
194 |
tatgcaaacataaaaacaccacactgaaaatccactattcataaaaacttcagaaatttaataaaaagtgtcattgtaatctcaaagtataattcaaatg |
293 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51208904 |
tatgcaaacataaaaacacgacactgaaaatccactattcataaaaacttcagaaatttaataaaaagtgtcattgtaatctcaaagtataattcaaatg |
51208805 |
T |
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| Q |
294 |
ataataggttgctgcgacatttgatatgctcgaacgcggattcaaattcacaa |
346 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
51208804 |
ataacaggttgctgcgacatttgatatgctcgaactcggattcaaattcacaa |
51208752 |
T |
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