View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21194_high_8 (Length: 379)
Name: NF21194_high_8
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_high_8 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 379
Target Start/End: Original strand, 47105623 - 47105974
Alignment:
| Q |
18 |
aaccttactatgacaaaggctagacaaggtggtggaagaagagttttggttttagtgttggaggatagccatgattgaatgagaggtttgtcgggttctt |
117 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47105623 |
aaccttactatgacaaaggcttgacgaggtggtggaagaagagttttggttttagtgttggaggatagccatgattgaatgagaggtttgtcgggttctt |
47105722 |
T |
|
| Q |
118 |
gcaatcctacgtagtgaaaagtgaggttgtggtgtttggtttggtatgatttgaggattatgttacggacaaggttgatttatgaaggtgttagagggtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
47105723 |
gcaatcctacgtagtgaaaagtgaggttgtagtgtttggtttggtatgatttgaggattatgttacggacaaggttgatttctgaaggtgttagagggtc |
47105822 |
T |
|
| Q |
218 |
aagtgggtgaggaatatgactgcattctatggagctacacaagagcatgaggagaaaggagaatatcaacttcaacttcatcttcattactcttgttgta |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47105823 |
aagtgggtgaggaatatgactgcattctatggagctacacaagagcatgaggagaaaggagaatatcaacttcaacttcatcttcattactcttgttgta |
47105922 |
T |
|
| Q |
318 |
tgatttttggtcgaaaaatgtaccatgcatgcaatacagactaataatggaccaatgctatc |
379 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
47105923 |
tgatttttggtcgaaaaatgta----------aatacagactaataatgaaccaatgctatc |
47105974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University