View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_low_10 (Length: 356)
Name: NF21194_low_10
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 42852241 - 42852578
Alignment:
| Q |
1 |
aaatgattaaaaatatgagaatttgataacttgtggatgccactatatgctaccatataacatccaagtttgattgatatagaaaatataaacaaagcat |
100 |
Q |
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| T |
42852241 |
aaatgattaaaaatatgagaatttgataacttgtggatgccactatatgctaccatataacatccaagtttgattgatatagagaatataaacaaagcat |
42852340 |
T |
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| Q |
101 |
gtgaagtaaaactatctaaatatgcatcaacatacggctcaaaaggttgtatcttgtttgtattgtcttccattgcaggtagttcatcatcatcccttat |
200 |
Q |
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| T |
42852341 |
gtgaagtaaaaccatctaaatatgcatcaacatacggctcaaaaggttgtatcttgtttgtattgtcttccattgcaggtagttcatcatcatcccttat |
42852440 |
T |
|
| Q |
201 |
gtccgtctcagtctcttgttgctcggtggctattacttttaaatcctgtttaaatatttcaggcctatacataaaacatgattnnnnnnntatgagaatt |
300 |
Q |
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| T |
42852441 |
gtccgtctcagtctcttgttgctcggtggctattacttttaaatcctgtttaaatatttcaggcctatacataaaacatgattaaaaaaatatgagaatt |
42852540 |
T |
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| Q |
301 |
tgatatgttgtggataccattatgtgccaccatacaac |
338 |
Q |
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| T |
42852541 |
tgatatgttgtggataccattatatgccaccatacaac |
42852578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 276
Target Start/End: Original strand, 42852092 - 42852240
Alignment:
| Q |
131 |
catacggctcaaaaggttgtatcttgtttgtattgtcttccattgcaggtagt---tcatcatcatcccttatgtccgtctcagtctcttgttgctcggt |
227 |
Q |
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| T |
42852092 |
catacagctcaaaaggttgtatcctgtttgtattggcttccagtggaggtagtccatcatcatcatcacttgtgtctgtctcattctcttgttgcacggt |
42852191 |
T |
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| Q |
228 |
ggctattacttttaaatcctgtttaaatatttcaggcctatacataaaa |
276 |
Q |
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|||| || | ||| |||| |||||||||||||||||||||||||||||| |
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| T |
42852192 |
ggctctttcatttgaatcatgtttaaatatttcaggcctatacataaaa |
42852240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 42852526 - 42852630
Alignment:
| Q |
9 |
aaaaatatgagaatttgataacttgtggatgccactatatgctaccatataacatccaagtttgattgatatagaaaatataaacaaagcatgtgaagta |
108 |
Q |
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|||||||||||||||||||| |||||||| ||| ||||||| |||||| ||||||||||||||| || |||| ||||| ||||||| ||| |||| | |
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| T |
42852526 |
aaaaatatgagaatttgatatgttgtggataccattatatgccaccatacaacatccaagtttgaatg--atagggaatatgaacaaagtatgggaagaa |
42852623 |
T |
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| Q |
109 |
aaactat |
115 |
Q |
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||||||| |
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| T |
42852624 |
aaactat |
42852630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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