View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21194_low_16 (Length: 305)

Name: NF21194_low_16
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21194_low_16
NF21194_low_16
[»] chr4 (2 HSPs)
chr4 (95-242)||(45909605-45909755)
chr4 (133-243)||(45916163-45916273)
[»] chr5 (3 HSPs)
chr5 (242-295)||(34607204-34607257)
chr5 (245-295)||(34632299-34632349)
chr5 (253-295)||(34607266-34607308)
[»] chr3 (3 HSPs)
chr3 (242-295)||(23435101-23435154)
chr3 (241-295)||(26712989-26713043)
chr3 (242-295)||(26708738-26708791)
[»] chr1 (4 HSPs)
chr1 (242-295)||(9791411-9791464)
chr1 (242-295)||(9795750-9795803)
chr1 (242-295)||(45994872-45994925)
chr1 (242-295)||(45999125-45999178)
[»] chr8 (2 HSPs)
chr8 (242-289)||(26763489-26763536)
chr8 (242-289)||(26767741-26767788)
[»] chr7 (2 HSPs)
chr7 (242-289)||(35926666-35926713)
chr7 (242-289)||(35930915-35930962)
[»] chr6 (1 HSPs)
chr6 (242-289)||(27695216-27695263)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 45909605 - 45909755
Alignment:
Q  95 agtctacaatgaattataaatccaaaatattgaccagaaaaaactcacggtgggtcccatgtcacg---gaaccaagagtcattggcgctgatctcgaca 191  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||||||||    
T  45909605 agtctacaatgaattataaatccaaactattgaccagaaaaaactcacggtgggtcccatgtcacgacggaaccaagaatcattggcgctgatctcgaca 45909704  T
Q  192 attctaacatgatccggaagctgactccgtgcattctcccactgatatcat 242  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45909705 attctaacatgatccggaagctgactcggtgcattctcccactgatatcat 45909755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 243
Target Start/End: Original strand, 45916163 - 45916273
Alignment:
Q  133 aaaaactcacggtgggtcccatgtcacggaaccaagagtcattggcgctgatctcgacaattctaacatgatccggaagctgactccgtgcattctccca 232  Q
    |||||||||| |||||||| |||||||| |||||||| || |||| ||| ||||| || |  ||||||||||| || |||||| |||| |||||||||||    
T  45916163 aaaaactcacagtgggtccaatgtcacgaaaccaagaatcgttggagctaatctcaacgaccctaacatgatcaggtagctgattccgcgcattctccca 45916262  T
Q  233 ctgatatcatg 243  Q
    || | ||||||    
T  45916263 ctaaaatcatg 45916273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 34607257 - 34607204
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34607257 tgttgagaatatggatcagaacctattattagagtttattgcagtattcctatg 34607204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 34632349 - 34632299
Alignment:
Q  245 tgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    ||||||||||||| ||||||||||||| |||||||||| ||||||||||||    
T  34632349 tgagaatatggatcagaacctattattggagtttattgtagtattcctatg 34632299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 295
Target Start/End: Original strand, 34607266 - 34607308
Alignment:
Q  253 tggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    ||||| ||||||||||||||||||||||||| |||||||||||    
T  34607266 tggatcagaacctattattagagtttattgctgtattcctatg 34607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 23435154 - 23435101
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23435154 tgttgagaatatggatcagaacctattattagagtttattgcagtattcctatg 23435101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 241 - 295
Target Start/End: Complemental strand, 26713043 - 26712989
Alignment:
Q  241 atgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  26713043 atgttgagaatatggatcagaacctattattagagtttattgtagtattcctatg 26712989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 26708791 - 26708738
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  26708791 tgttgagaatatggatcagaacctattattagagtttattgtagtattcctatg 26708738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 9791464 - 9791411
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  9791464 tgttgagaatatggatcagaacctattattagagtttattgtagtattcctatg 9791411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 9795803 - 9795750
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  9795803 tgttgagaatatggatcagaacctattattagagtttattgtagtattcctatg 9795750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 45994925 - 45994872
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  45994925 tgttgagaatatggatcagaacctattattagagtttattgtagtattcctatg 45994872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 295
Target Start/End: Complemental strand, 45999178 - 45999125
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtattcctatg 295  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  45999178 tgttgagaatatggatcagaacctattattagagtttattgtagtattcctatg 45999125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 26763489 - 26763536
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtatt 289  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  26763489 tgttgagaatatggatcagaacctattattagagtttattgtagtatt 26763536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 26767741 - 26767788
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtatt 289  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  26767741 tgttgagaatatggatcagaacctattattagagtttattgtagtatt 26767788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 35926713 - 35926666
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtatt 289  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  35926713 tgttgagaatatggatcagaacctattattagagtttattgtagtatt 35926666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 35930962 - 35930915
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtatt 289  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  35930962 tgttgagaatatggatcagaacctattattagagtttattgtagtatt 35930915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 27695263 - 27695216
Alignment:
Q  242 tgttgagaatatggatgagaacctattattagagtttattgcagtatt 289  Q
    |||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  27695263 tgttgagaatatggatcagaacctattattagagtttgttgtagtatt 27695216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University