View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21194_low_18 (Length: 290)

Name: NF21194_low_18
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21194_low_18
NF21194_low_18
[»] chr5 (2 HSPs)
chr5 (1-172)||(18481737-18481908)
chr5 (24-172)||(33905515-33905663)
[»] chr1 (2 HSPs)
chr1 (1-172)||(34345728-34345899)
chr1 (191-290)||(47105969-47106068)
[»] chr2 (1 HSPs)
chr2 (1-172)||(6812649-6812820)
[»] chr3 (3 HSPs)
chr3 (24-172)||(46833956-46834104)
chr3 (74-116)||(22513980-22514022)
chr3 (74-116)||(32391482-32391524)
[»] chr8 (2 HSPs)
chr8 (7-172)||(6282993-6283156)
chr8 (41-172)||(16425360-16425491)
[»] chr4 (1 HSPs)
chr4 (74-117)||(8973032-8973075)


Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 18481737 - 18481908
Alignment:
Q  1 aaaaatgcagattagatttgagaggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481737 aaaaatgcagattggatttgagaggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaatt 18481836  T
Q  101 acagaattgccatccacatcagcaagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481837 acagaattgccatccacatcagcaagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 18481908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 33905515 - 33905663
Alignment:
Q  24 ggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||||    
T  33905515 ggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgtttttcaataaaattgcaaaattgccatccacatcagc 33905614  T
Q  124 aagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 172  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  33905615 aagtggtatgaggtgtgtacaagagagagtggttgatctatcattttcc 33905663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 34345728 - 34345899
Alignment:
Q  1 aaaaatgcagattagatttgagaggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34345728 aaaaatgcagattggatttgagaggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaatt 34345827  T
Q  101 acagaattgccatccacatcagcaagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34345828 acagaattgccatccacatcagcaagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 34345899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 191 - 290
Target Start/End: Complemental strand, 47106068 - 47105969
Alignment:
Q  191 tcccattcaaaatcaaaaacaatattgattacgtaacaactagggtcctcgtgatgttaagaaatacaattgactttataataggaggaataaagatagc 290  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47106068 tcccattcaaaatcaaaaacagtattgattacgtaacaactagggtcctcgtgatgttaagaaatacaattgactttataataggaggaataaagatagc 47105969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 6812649 - 6812820
Alignment:
Q  1 aaaaatgcagattagatttgagaggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaatt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6812649 aaaaatgcagattggatttgagaggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaatt 6812748  T
Q  101 acagaattgccatccacatcagcaagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 172  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6812749 acagaattgccattcatatcagcaagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 6812820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 46833956 - 46834104
Alignment:
Q  24 ggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| || |||||||||||||||||||    
T  46833956 ggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgcctcttgtttttcaataaaattgcaaaattgccatccacatcagc 46834055  T
Q  124 aagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 172  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||    
T  46834056 aagtggtatgaggtgtgtacaagagagagtggttgatctatcattttcc 46834104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 22514022 - 22513980
Alignment:
Q  74 ttttgccccttgctttttaataaaattacagaattgccatcca 116  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  22514022 ttttgccccttgctttttaacaaaattacaaagttgccatcca 22513980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 32391524 - 32391482
Alignment:
Q  74 ttttgccccttgctttttaataaaattacagaattgccatcca 116  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  32391524 ttttgccccttgctttttaacaaaattacaaagttgccatcca 32391482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 7 - 172
Target Start/End: Original strand, 6282993 - 6283156
Alignment:
Q  7 gcagattagatttgagaggaaggagagagttcagagagggtgtggaaaaaggaacatgaaatatcatttttgccccttgctttttaataaaattacagaa 106  Q
    |||||| ||||||||| ||| | |||||||||| |||||||| ||||   |||||||||||| |||||||| ||||||| |||| ||||||| |||||||    
T  6282993 gcagataagatttgaggggaggaagagagttcatagagggtgaggaag--ggaacatgaaatctcatttttaccccttgtttttaaataaaactacagaa 6283090  T
Q  107 ttgccatccacatcagcaagtggtatgaggtgtgtacaaaagagagtggtccatctatcattttcc 172  Q
    ||| |||||||||||||||||||||  | ||||||||||||| |||||||||||||||||||||||    
T  6283091 ttgtcatccacatcagcaagtggtacaaagtgtgtacaaaagggagtggtccatctatcattttcc 6283156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 172
Target Start/End: Original strand, 16425360 - 16425491
Alignment:
Q  41 agagggtgtggaaaaagg-aacatgaaatatcatttttgccccttgctttttaataaaattacagaattgccatccacatcagcaagtggtatgaggtgt 139  Q
    |||||||| ||||||||| ||| |||||| ||| |||| |||||| |||||||||||||||||| ||||| ||||||||||||||||||| || | ||||    
T  16425360 agagggtgaggaaaaagggaacgtgaaatctcaattttaccccttactttttaataaaattacataattgtcatccacatcagcaagtggcataatgtgt 16425459  T
Q  140 gtacaaaagagagtggtccatctatcattttcc 172  Q
    ||||||||| || ||||| ||||||||||||||    
T  16425460 gtacaaaag-gaatggtcgatctatcattttcc 16425491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 8973075 - 8973032
Alignment:
Q  74 ttttgccccttgctttttaataaaattacagaattgccatccac 117  Q
    |||||||||||||||||||| ||||||||| | |||||||||||    
T  8973075 ttttgccccttgctttttaacaaaattacaaagttgccatccac 8973032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University