View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21194_low_2 (Length: 633)

Name: NF21194_low_2
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21194_low_2
NF21194_low_2
[»] chr2 (6 HSPs)
chr2 (17-512)||(24563643-24564138)
chr2 (520-618)||(24564203-24564301)
chr2 (533-618)||(26022099-26022185)
chr2 (533-618)||(27942208-27942294)
chr2 (520-598)||(19520660-19520738)
chr2 (557-620)||(32690745-32690809)
[»] chr1 (2 HSPs)
chr1 (519-618)||(45836247-45836347)
chr1 (543-600)||(41502394-41502451)
[»] chr3 (3 HSPs)
chr3 (533-601)||(37268690-37268758)
chr3 (543-600)||(13297831-13297888)
chr3 (533-601)||(32649100-32649168)
[»] chr5 (2 HSPs)
chr5 (533-600)||(34305011-34305078)
chr5 (536-618)||(20428253-20428335)
[»] chr7 (2 HSPs)
chr7 (533-618)||(2791887-2791973)
chr7 (528-600)||(28287377-28287449)
[»] chr6 (1 HSPs)
chr6 (533-620)||(21104299-21104387)


Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 512
Target Start/End: Original strand, 24563643 - 24564138
Alignment:
Q  17 atgatcaagtacatgtggtacagcatggagactcggtgatgctaaaccatcagcagttcccaaatgaatttggatcgttggattgggaaggtggtgctaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24563643 atgatcaagtacatgtggtacagcatggagactcggtgatgctcaaccatcagcagttctcaaatgaatttggatcgttggattgggaaggtggtgctaa 24563742  T
Q  117 caccgttgatcagtcttactggacacactctcattggtctgattatgtcaatcattcatcctttctttatcatcttccctgaaaaacgaataagcctcaa 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||| | ||||||||||| ||||| ||||||||| ||||||| |||||||||||||    
T  24563743 caccgttgatcagtcttactggacacagtctcattggtctgatcatgtgattcattcatcctctctttttcatcttccatgaaaaatgaataagcctcaa 24563842  T
Q  217 caaatttctacacttannnnnnnnnnnnnnnnnctagcagttaatgttttgtttctagttggaatcaagacaaaacaaatgttttattttaacagaatgt 316  Q
    ||||||||||||||||                 ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24563843 caaatttctacacttatttttattttttgttttctaccagttattgttttgtttctagttggaatcaagacaaaacaaatgttttattttaacagaatgt 24563942  T
Q  317 gaaagaaagcgtgaaagcatgtataatttattaatacaagatatagtattccataaaaatacaagtaatgtaattttgtttatttgtgtgttgattgtga 416  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  24563943 gaaagacagcatgaaagcatgtataatttattaatacaagatatagtattccataaaaatacaagtaatgtaattttgtttgtttgtttgttgattgtga 24564042  T
Q  417 ttgatcttaagattgaggttgcttgtgcaataaacgtatcaatgttgctttctttaagattctcttataattatttctacgcattttattattatt 512  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  24564043 ttgatcttaaggttgaggttgtttgtgcaataaatgtatcaatgttgctttctttaagattcttttataattatttctacgcattttattattatt 24564138  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 520 - 618
Target Start/End: Original strand, 24564203 - 24564301
Alignment:
Q  520 gagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgaccgtggctgcaccctttg 618  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||||||||||| |||||||||    
T  24564203 gagtataccagacaaggttaaactgttatctttttagtggctaaaagtaagtatgttgacttttgtttttagttatcatgaccgtggctacaccctttg 24564301  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 618
Target Start/End: Complemental strand, 26022185 - 26022099
Alignment:
Q  533 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga-ccgtggctgcaccctttg 618  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  ||||||||||||||||||||||||   ||||||||||||||||    
T  26022185 aaggttaaactgctatctttacaatggctaaaagcaaatatgcaaacttttgtttttagttatcatgattggtggctgcaccctttg 26022099  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 618
Target Start/End: Complemental strand, 27942294 - 27942208
Alignment:
Q  533 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcaccctttg 618  Q
    |||||||||||| |||||||  | |||||||||||||||||| |||||||| ||||||||||| |||||  ||| ||||||||||||    
T  27942294 aaggttaaactgatatctttccaatggctaaaaacaaatatgctaacttttatttttagttattatgactggtgactgcaccctttg 27942208  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 520 - 598
Target Start/End: Complemental strand, 19520738 - 19520660
Alignment:
Q  520 gagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcat 598  Q
    ||||||| |||| ||||||||| ||||||||||| ||||| ||||| |||||||||| | ||| |||||||| ||||||    
T  19520738 gagtatagcagagaaggttaaattgttatcttttcagtggttaaaagcaaatatgtttagtttagtttttagctatcat 19520660  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 557 - 620
Target Start/End: Original strand, 32690745 - 32690809
Alignment:
Q  557 tggctaaaaacaaatatgttaacttttgtttttagttatcatgacc-gtggctgcaccctttgct 620  Q
    ||||||||| ||||| ||  ||| |||||||||||||||||||||| ||||||||||| ||||||    
T  32690745 tggctaaaagcaaatttgcaaacctttgtttttagttatcatgaccagtggctgcaccatttgct 32690809  T

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Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 519 - 618
Target Start/End: Complemental strand, 45836347 - 45836247
Alignment:
Q  519 agagtataccagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgaccg-tggctgcacccttt 617  Q
    |||||||| |||| ||||||||||||||||||||  ||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  45836347 agagtatagcagaaaaggttaaactgttatctttccagtggctgaaagcaaatttgttaacttttgtttttagttatcatgaccgatggctgcacccttt 45836248  T
Q  618 g 618  Q
    |    
T  45836247 g 45836247  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 41502451 - 41502394
Alignment:
Q  543 tgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 600  Q
    ||||||| ||| ||||||||||  |||||||| | |||||||||||||| ||||||||    
T  41502451 tgttatcatttcagtggctaaaggcaaatatgcttacttttgtttttagctatcatga 41502394  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 533 - 601
Target Start/End: Original strand, 37268690 - 37268758
Alignment:
Q  533 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac 601  Q
    ||||||||||||||||||||  ||||| ||||  |||||||||| |||||||||||||| |||||||||    
T  37268690 aaggttaaactgttatctttccagtggttaaaggcaaatatgtttacttttgtttttagctatcatgac 37268758  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 543 - 600
Target Start/End: Complemental strand, 13297888 - 13297831
Alignment:
Q  543 tgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 600  Q
    ||||||| |||||||||||||| ||||||||| | |||||||||||||| ||||||||    
T  13297888 tgttatcgttttagtggctaaagacaaatatgcttacttttgtttttagctatcatga 13297831  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 533 - 601
Target Start/End: Original strand, 32649100 - 32649168
Alignment:
Q  533 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac 601  Q
    |||||||||||||||||||| || ||| ||||  |||||| ||| || ||| ||||||| |||||||||    
T  32649100 aaggttaaactgttatctttctattggttaaacgcaaatacgttcacgtttatttttagctatcatgac 32649168  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 533 - 600
Target Start/End: Complemental strand, 34305078 - 34305011
Alignment:
Q  533 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 600  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  |||||| |||||||||||||||||    
T  34305078 aaggttaaactgctatctttccaatggctaaaagcaaatatgcaaactttcgtttttagttatcatga 34305011  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 536 - 618
Target Start/End: Original strand, 20428253 - 20428335
Alignment:
Q  536 gttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcaccctttg 618  Q
    ||||||||| |||||||  | ||||||||| ||||||||  | ||||| |||||||||||||||||  ||||||||||||||||    
T  20428253 gttaaactgctatctttccaatggctaaaagcaaatatgcaatctttt-tttttagttatcatgactggtggctgcaccctttg 20428335  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 533 - 618
Target Start/End: Original strand, 2791887 - 2791973
Alignment:
Q  533 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga-ccgtggctgcaccctttg 618  Q
    |||||||||||| |||||||  | ||||||||| ||||||||  || |||||||||| ||||||||||   ||||||||||||||||    
T  2791887 aaggttaaactgctatctttccaatggctaaaagcaaatatgcaaatttttgtttttggttatcatgattggtggctgcaccctttg 2791973  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 600
Target Start/End: Original strand, 28287377 - 28287449
Alignment:
Q  528 cagataaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatga 600  Q
    |||| ||||||||| ||||||||||| | ||||||||| |||||||| | || ||| ||||||| ||||||||    
T  28287377 cagagaaggttaaattgttatcttttcattggctaaaagcaaatatggttacctttatttttagctatcatga 28287449  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 533 - 620
Target Start/End: Complemental strand, 21104387 - 21104299
Alignment:
Q  533 aaggttaaactgttatctttttagtggctaaaaacaaatatgttaacttttgtttttagttatcatgac-cgtggctgcaccctttgct 620  Q
    ||||||||| || |||||||  | ||||||||| |||||| |  ||| |||||||||||||||||||||  ||||||||||| ||||||    
T  21104387 aaggttaaaatgctatctttccaatggctaaaagcaaataagcaaacctttgtttttagttatcatgactggtggctgcaccatttgct 21104299  T

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