View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_low_20 (Length: 272)
Name: NF21194_low_20
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_20 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 50 - 272
Target Start/End: Original strand, 11890046 - 11890268
Alignment:
| Q |
50 |
gggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacatcacattacatttctcaatcc |
149 |
Q |
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| T |
11890046 |
gggtaacgtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacatcacattacatttctcaattc |
11890145 |
T |
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| Q |
150 |
tttcatttttatatattttatgtaaatcactattggctcgtagtttctcaataccattacaactaaactgcaagtttcagtaatgagattcatatagaca |
249 |
Q |
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| T |
11890146 |
tttcatttttatagattttatgtacatcactattggctcgtagtttctcaataccattacaactaaactgcaagtttcagtaatgagattcatatagaca |
11890245 |
T |
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| Q |
250 |
tgtttttattaacatctttgttt |
272 |
Q |
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| T |
11890246 |
tgtttttattaacatctttgttt |
11890268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 11880591 - 11880675
Alignment:
| Q |
51 |
ggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacatcacatt |
135 |
Q |
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| T |
11880591 |
ggtaaagtctacagcttcagatgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacattacatt |
11880675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 11903091 - 11903175
Alignment:
| Q |
51 |
ggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacatcacatt |
135 |
Q |
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| T |
11903091 |
ggtaaagtctacagcttcagatgttatgattggaattatcctgcaaagtctcataacaagaaacatctcaaaggtacattacatt |
11903175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 52820743 - 52820658
Alignment:
| Q |
50 |
gggtaaagtctacagcttcagatgttatgactgggagtatcctgaaaagtctcataacaagaaacacctcaaaggtacatcacatt |
135 |
Q |
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| T |
52820743 |
gggtaaagtctacagctacaagtgctataattgggagtatcctgaaaagtctcatgacaagaaacatctcaaaggtatattacatt |
52820658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 11890040 - 11890006
Alignment:
| Q |
19 |
cttcacgatcaatgcgtggtggtagggatgagggt |
53 |
Q |
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| T |
11890040 |
cttcacgatcaatgcatggtggtagggatgagggt |
11890006 |
T |
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