View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_low_23 (Length: 258)
Name: NF21194_low_23
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 21 - 180
Target Start/End: Complemental strand, 17872605 - 17872446
Alignment:
| Q |
21 |
tgatatgtacatataacgtaaatatattttaatcatgcattatttgccttcacattatttaatctagagggaaaaatttgtgtttttccctttttaacct |
120 |
Q |
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| T |
17872605 |
tgatatgtacatataacgtaaatatattttaatcatgcattatttgccttcacattatttaatctagagggaaaaatttgtgtttttccctttttaacct |
17872506 |
T |
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| Q |
121 |
cataattggaacatcatctagcatcactttaattaataataattctccattttttcaatt |
180 |
Q |
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| T |
17872505 |
cataatttgaacatcatgtagcatcactttaattaataataattctccattttttcaatt |
17872446 |
T |
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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 17862030 - 17861949
Alignment:
| Q |
21 |
tgatatgtacatataacgtaaatatattttaatcatgcattatttgccttcacattatttaatctagagggaaaaatttgtg |
102 |
Q |
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| T |
17862030 |
tgatatgtacatataacgtaaatatattttactcatgcattatttgccttcactttatttaatctagagggaaaattttgtg |
17861949 |
T |
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