View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21194_low_25 (Length: 241)
Name: NF21194_low_25
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 12811768 - 12811980
Alignment:
| Q |
10 |
acatcatcacaaaacccaaaatacaaaactataagaaagaaaataaatgattctattaaccattgggatttggacctcacaaaaatagacaataaaattg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12811768 |
acatcatcacaaaacccaaaatacaaaactataagaaagaaaataaatgattctattaaccattgggatttggacctcacaaaaatagacaataaaattg |
12811867 |
T |
|
| Q |
110 |
aaactttcaaacaattaataaatagatctatnnnnnnnttacccaacacttccaaattcatagagtttgccacggctagagaaaatgataagggcaactt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12811868 |
aaactttcaaacaattaataaatagatctataaaaaaattacccaacacttccaaattcatagagtttgccacggctagagaaaatgataagggcaactt |
12811967 |
T |
|
| Q |
210 |
cagcatcacagag |
222 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12811968 |
cagcatcacagag |
12811980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 45671541 - 45671486
Alignment:
| Q |
164 |
aattcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcaca |
219 |
Q |
| |
|
|||||||| |||||||||||| | ||||| |||||||| ||||||||||||||||| |
|
|
| T |
45671541 |
aattcatatagtttgccacggttggagaagatgataagagcaacttcagcatcaca |
45671486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 20543490 - 20543542
Alignment:
| Q |
167 |
tcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcaca |
219 |
Q |
| |
|
||||||||||| ||||||||||||||||| || || ||||| ||||||||||| |
|
|
| T |
20543490 |
tcatagagttttccacggctagagaaaataatgagagcaacctcagcatcaca |
20543542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 22611628 - 22611585
Alignment:
| Q |
176 |
ttgccacggctagagaaaatgataagggcaacttcagcatcaca |
219 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
22611628 |
ttgccacggcttgaaaaaatgataagtgcaacttcagcatcaca |
22611585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University