View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21194_low_26 (Length: 238)
Name: NF21194_low_26
Description: NF21194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21194_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 29769843 - 29769634
Alignment:
| Q |
13 |
aatattaagggagttcttactcatggtggacgctatgttcagtacaatatctatggtaatttatttgaagtgtctaacaagtatgtccctcctattcgtc |
112 |
Q |
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| T |
29769843 |
aatattaagggagttcttactcatggtggacgctatgttcagtacaatatctatggtaatttatttgaagtgtctaacaagtatgtccctcctattcgtc |
29769744 |
T |
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| Q |
113 |
ctattggaagaggagcttatggtattgtctggtaaggaaatacaactttatggggttcatannnnnnnccttgcttgattgatttgtttgtttgtgggta |
212 |
Q |
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| T |
29769743 |
ctattggaagaggagcttatggtattgtctggtaaggaaatacaactttatggggttcattttttttttcttgcttgattgatttaattgtttgtgggta |
29769644 |
T |
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| Q |
213 |
aactatgaag |
222 |
Q |
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|||||||||| |
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| T |
29769643 |
aactatgaag |
29769634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 29769239 - 29769160
Alignment:
| Q |
73 |
ttatttgaagtgtctaacaagtatgtccctcctattcgtcctattggaagaggagcttatggtattgtctggtaaggaaa |
152 |
Q |
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| T |
29769239 |
ttatttaaagtgtctaacaaatatgtccctcctattcgttctgttggaagaggagcttatggtattttctggtaaggaaa |
29769160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 11056112 - 11056229
Alignment:
| Q |
31 |
actcatggtggacgctatgttcagtacaatatctatggtaatttatttgaagtgtctaacaagtatgtccctcctattcgtcctattggaagaggagctt |
130 |
Q |
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| T |
11056112 |
actcatggtggaaggtatttgcagtacaatatctatggtaacctctttgaggtttctagaaagtatgttcctcctattcgtcctgtcggtagaggtgctt |
11056211 |
T |
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| Q |
131 |
atggtattgtctggtaag |
148 |
Q |
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| T |
11056212 |
atggtattgtttggtaag |
11056229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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